Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_B10
(470 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0297 + 2399731-2401176 28 3.3
07_01_0751 - 5777017-5778032,5779718-5780111,5780830-5781936 28 4.4
02_04_0413 + 22681957-22682035,22682253-22682788 28 4.4
07_03_0035 - 12677942-12678568 27 5.8
12_02_0753 + 22806544-22806858,22807214-22807609,22807709-228078... 27 7.6
11_06_0682 - 26253319-26253575,26254009-26254114 27 7.6
07_01_1039 - 9037689-9038225,9038831-9040627 27 7.6
05_01_0042 - 290077-290676,291093-291233,291675-291764,292364-29... 27 7.6
03_02_0587 + 9669283-9670497 27 7.6
02_03_0414 - 18792830-18793126,18793131-18793232,18793454-18793753 27 7.6
01_06_0715 + 31416338-31416500,31416601-31416710,31416808-314168... 27 7.6
>08_01_0297 + 2399731-2401176
Length = 481
Score = 28.3 bits (60), Expect = 3.3
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 5/39 (12%)
Frame = +2
Query: 227 ASSAITPPATVTLQPSGTTLWT-----NAYHLKNAQRRF 328
+++A PPAT L+P+ +L T N HLKN + F
Sbjct: 2 SAAAAAPPATSLLRPAAASLTTASNSSNRVHLKNLEHLF 40
>07_01_0751 - 5777017-5778032,5779718-5780111,5780830-5781936
Length = 838
Score = 27.9 bits (59), Expect = 4.4
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Frame = -3
Query: 270 GWRVTVAGGVIAEDAFFFHGVGFLASGF--RHFLAATRVVTMRPNRTLPVTTSIYIDAPA 97
G+ V ++GGV A D F + F S + +H R T+S+Y+ A A
Sbjct: 43 GYDVGISGGVTAMDGFL---IKFFPSVYARKHRARENNYCKFDDQRLQLFTSSLYLAALA 99
Query: 96 RIFSPS--CRRNGHRHQQE 46
F+ S C R G R +
Sbjct: 100 ASFAASRLCTRLGRRRTMQ 118
>02_04_0413 + 22681957-22682035,22682253-22682788
Length = 204
Score = 27.9 bits (59), Expect = 4.4
Identities = 22/76 (28%), Positives = 27/76 (35%), Gaps = 1/76 (1%)
Frame = +1
Query: 91 YPRGCIYINGRCHRECPVGTHSYNTGCSQKMPEPTCEEPNPVKEEG-ILCDYSACYCDPP 267
+P C G C C G G Q P P+CE +P + G C S C PP
Sbjct: 104 HPPCCESAAGCCCNGCSGG----GCGGGQCPPSPSCENHHPPCKPGCCCCGCSGGECPPP 159
Query: 268 TVRNNALDKCVPLEEC 315
+C P C
Sbjct: 160 P-SPPCQHECPPTPPC 174
>07_03_0035 - 12677942-12678568
Length = 208
Score = 27.5 bits (58), Expect = 5.8
Identities = 25/67 (37%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = -3
Query: 267 WRVTVAGGVIAEDAFFFHGVGFLASGFRHFLAATRVVTMRPNRTLPVTTSI-YIDAPARI 91
WR + +GGV+A A F G LAS AA R +RP R LP+ ++ AP R
Sbjct: 89 WRASCSGGVVASPARF--GAVMLASP----TAANRWFLLRPAR-LPLPLALPAAHAPRRR 141
Query: 90 FSPSCRR 70
C R
Sbjct: 142 QPRLCHR 148
>12_02_0753 +
22806544-22806858,22807214-22807609,22807709-22807840,
22807977-22808354
Length = 406
Score = 27.1 bits (57), Expect = 7.6
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 51 AGDGDRFFYNWERISSRV 104
A DG RFFY+W+R R+
Sbjct: 15 ATDGGRFFYDWQRGDRRM 32
>11_06_0682 - 26253319-26253575,26254009-26254114
Length = 120
Score = 27.1 bits (57), Expect = 7.6
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +2
Query: 209 TP*KKKASSAITPPATVTLQPSGTTLWTNAYH 304
TP S+ +P T T P G+ +W + +H
Sbjct: 55 TPTTPVTPSSSSPTTTATTTPRGSNVWRSVFH 86
>07_01_1039 - 9037689-9038225,9038831-9040627
Length = 777
Score = 27.1 bits (57), Expect = 7.6
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -2
Query: 217 SRGWVPRKWVPAFSGCNPCCNY 152
S W+P + P FSGCN C +
Sbjct: 535 SLDWIPMR--PTFSGCNVCVKF 554
>05_01_0042 -
290077-290676,291093-291233,291675-291764,292364-292563,
292685-292743,292827-292942
Length = 401
Score = 27.1 bits (57), Expect = 7.6
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Frame = +1
Query: 181 MPEPTCEEPNPVKEEGILCDYSAC---YCDPPTVRNNA 285
+PEP +P P E LC Y C + D +R +A
Sbjct: 71 VPEPEAVKPEPTTEILFLCSYENCGKTFVDVAALRKHA 108
>03_02_0587 + 9669283-9670497
Length = 404
Score = 27.1 bits (57), Expect = 7.6
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -3
Query: 291 VQSVVPDGWRVTVAGGVIAEDAFFFHGVGFL 199
+ S VPDG R V +AE A HG+ ++
Sbjct: 253 INSPVPDGRRRVVLATDVAETAVLVHGITYV 283
>02_03_0414 - 18792830-18793126,18793131-18793232,18793454-18793753
Length = 232
Score = 27.1 bits (57), Expect = 7.6
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = -2
Query: 262 GHSSRRSNRRGCLLLSRGWVPRKWVPAFSGCNPCCNYASQQDTP 131
G R RR LLSRGW PR+ P+ G + A+QQ P
Sbjct: 47 GEEGRCDGRRHRCLLSRGW-PRRSSPSTVGLD-----AAQQSAP 84
>01_06_0715 +
31416338-31416500,31416601-31416710,31416808-31416880,
31416988-31417135,31417867-31418133,31418234-31418576,
31418665-31418802,31419389-31419514,31419626-31419838,
31419918-31420164,31420247-31420446,31420538-31420891,
31420984-31421568
Length = 988
Score = 27.1 bits (57), Expect = 7.6
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 313 CPKKVSTKAEAESHA*SRK*LITNNLCNIYVIKN 414
CPKK + K+E E H SR+ + + + N+ I N
Sbjct: 577 CPKKKAEKSEKEMHRDSRREDLESAIFNLREIDN 610
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,613,117
Number of Sequences: 37544
Number of extensions: 321087
Number of successful extensions: 927
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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