Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_B10
(470 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0) 34 0.052
SB_22953| Best HMM Match : EGF_2 (HMM E-Value=1.3e-14) 33 0.090
SB_29487| Best HMM Match : Collagen (HMM E-Value=8.8) 33 0.16
SB_101| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.21
SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16) 30 0.84
SB_39509| Best HMM Match : CBM_1 (HMM E-Value=5.5) 29 1.5
SB_30010| Best HMM Match : SMC_hinge (HMM E-Value=2) 29 1.5
SB_29080| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_20933| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11) 28 3.4
SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 28 4.5
SB_37927| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.9
SB_38564| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.9
SB_51897| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.8
SB_50111| Best HMM Match : GCC2_GCC3 (HMM E-Value=0) 27 7.8
SB_21746| Best HMM Match : PHD (HMM E-Value=0.066) 27 7.8
SB_55227| Best HMM Match : Ank (HMM E-Value=1.9e-30) 27 7.8
SB_36474| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.8
SB_9777| Best HMM Match : PHD (HMM E-Value=0.066) 27 7.8
SB_6377| Best HMM Match : Exo_endo_phos (HMM E-Value=6.5e-10) 27 7.8
SB_5823| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.8
SB_2883| Best HMM Match : Exo_endo_phos (HMM E-Value=2.1e-09) 27 7.8
>SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0)
Length = 960
Score = 34.3 bits (75), Expect = 0.052
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +1
Query: 124 CHRECPVGTHSYNTGCSQKMPEPTCEEPNPVKEEGILCDYSACYCDP 264
C+ C G + N +C++P P G++C S+C CDP
Sbjct: 698 CNASCSAGRYGINCVARPGWTGKSCKDPCPAGRYGMMC-ASSCRCDP 743
>SB_22953| Best HMM Match : EGF_2 (HMM E-Value=1.3e-14)
Length = 635
Score = 33.5 bits (73), Expect = 0.090
Identities = 18/67 (26%), Positives = 31/67 (46%)
Frame = +1
Query: 103 CIYINGRCHRECPVGTHSYNTGCSQKMPEPTCEEPNPVKEEGILCDYSACYCDPPTVRNN 282
C ++ GRC + CPVGT+ ++ C++ E+ + V E C +C P N
Sbjct: 237 CDHVTGRCDQRCPVGTYGFD--CAKVCACADTEKCSVVSGE-CTCIAGSCSSSCPCAGNA 293
Query: 283 ALDKCVP 303
++ P
Sbjct: 294 TCEEAHP 300
>SB_29487| Best HMM Match : Collagen (HMM E-Value=8.8)
Length = 192
Score = 32.7 bits (71), Expect = 0.16
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -2
Query: 259 HSSRRSNRRGCLLLSRGWVPRKW 191
H SR SN RGC+L R +P +W
Sbjct: 145 HPSRSSNPRGCMLRKRHTIPNRW 167
>SB_101| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 61
Score = 32.3 bits (70), Expect = 0.21
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +1
Query: 235 CDYSACYCDP--PTVRNNALDKCVPLEECPKKV 327
CDY+ C C P P+V N+ KCV L++C K +
Sbjct: 4 CDYAVCVCGPCGPSVDCNS--KCVLLKDCNKDI 34
>SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16)
Length = 705
Score = 30.3 bits (65), Expect = 0.84
Identities = 20/66 (30%), Positives = 29/66 (43%)
Frame = +1
Query: 148 THSYNTGCSQKMPEPTCEEPNPVKEEGILCDYSACYCDPPTVRNNALDKCVPLEECPKKV 327
T++YNTG S + + TC E K C C+ DPP +CV EC ++
Sbjct: 164 TYTYNTGQSALVQDVTCPENAVFKYCTSACP-ETCH-DPPGRNKTCSMRCVEGCECKEEF 221
Query: 328 STKAEA 345
+ A
Sbjct: 222 VQRVNA 227
>SB_39509| Best HMM Match : CBM_1 (HMM E-Value=5.5)
Length = 78
Score = 29.5 bits (63), Expect = 1.5
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +1
Query: 235 CDYSACYCDP--PTVRNNALDKCVPLEECPKKV 327
CDY+ C P P+V ++ KCV L++C K +
Sbjct: 4 CDYAVCVGGPCGPSVDCSSNSKCVLLKDCNKDI 36
>SB_30010| Best HMM Match : SMC_hinge (HMM E-Value=2)
Length = 971
Score = 29.5 bits (63), Expect = 1.5
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +1
Query: 235 CDYSACYCDP--PTVRNNALDKCVPLEECPKKV 327
CDY+ C P P+V ++ KCV L++C K +
Sbjct: 4 CDYAVCVGGPCGPSVDCSSNSKCVLLKDCNKDI 36
>SB_29080| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 88
Score = 29.1 bits (62), Expect = 1.9
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +1
Query: 235 CDYSACYCDP--PTVRNNALDKCVPLEECPKKV 327
CDY+ C P P+V ++ KCV L++C K +
Sbjct: 4 CDYTVCVGAPCGPSVDCSSNSKCVLLKDCNKDI 36
>SB_20933| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 297
Score = 29.1 bits (62), Expect = 1.9
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +1
Query: 145 GTHSYNTGCSQKMPEPTCEEPNPVKEEGILCDYSACYCD 261
G+HS + +P C P+K++G D++ Y D
Sbjct: 127 GSHSNTNNIYEGLPADYCGSTTPLKDDGPTADFNPIYDD 165
>SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)
Length = 3810
Score = 28.3 bits (60), Expect = 3.4
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +1
Query: 88 EYPRGCIYINGRCHRE-CPVGTHSYNTGCSQKMPEPTCEE 204
E P G I G E CP+GT+ NTG + +C E
Sbjct: 1211 ECPSGTYCIGGNSEPELCPIGTYQPNTGRTALADCTSCTE 1250
>SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 628
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +1
Query: 97 RGCIYINGRCHRECPVGTHSYNTGCSQKMPEPTC 198
R C+Y + RC + G S TGCS TC
Sbjct: 159 RRCVYNSQRCDGQNDCGDWSDETGCSTPPIPTTC 192
>SB_37927| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1032
Score = 27.5 bits (58), Expect = 5.9
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 303 WYAFVQSVVPDGWRVTVAGGVIA 235
WY + V PDG RVT+ GG ++
Sbjct: 756 WYRDRRVVTPDGSRVTINGGSLS 778
>SB_38564| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 61
Score = 27.5 bits (58), Expect = 5.9
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +1
Query: 235 CDYSACYCDP--PTVRNNALDKCVPLEECPKKV 327
CDY+ C P P+V N+ KCV L++C K +
Sbjct: 4 CDYAVCVGGPCGPSVDCNS--KCVLLKDCNKDI 34
>SB_51897| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 587
Score = 27.1 bits (57), Expect = 7.8
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +2
Query: 230 SSAITPPATVTLQPSGTTLWTNAYHLKNAQRRFPQK 337
S A TPP V++ PS + +A++++N P+K
Sbjct: 291 SFASTPPRVVSVAPSPPSTTESAFYVRNFPGTTPEK 326
>SB_50111| Best HMM Match : GCC2_GCC3 (HMM E-Value=0)
Length = 1115
Score = 27.1 bits (57), Expect = 7.8
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = +1
Query: 163 TGCSQKMPEPTCEEPNPVKEEGILCDYSAC-YCDPPTVRNNALDKCVPLEECPKKVSTKA 339
TG + P PTCE + + + DY C C + N+ C ++CP+ S A
Sbjct: 339 TGIAMDHPVPTCEYGWILIKHPVTLDYPICSTCPQGHIYNSEARGC---QKCPEGQSAPA 395
Query: 340 EA 345
A
Sbjct: 396 GA 397
>SB_21746| Best HMM Match : PHD (HMM E-Value=0.066)
Length = 203
Score = 27.1 bits (57), Expect = 7.8
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +1
Query: 145 GTHSYNTGCSQKMPEPTCEEPNPVKEEGILCDY 243
G+ N G + K P C +P + + GI CD+
Sbjct: 86 GSVEPNPGPNYKFPCGICSKPVRINQRGIQCDF 118
>SB_55227| Best HMM Match : Ank (HMM E-Value=1.9e-30)
Length = 662
Score = 27.1 bits (57), Expect = 7.8
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 152 IVTTRVAARKCRNPLARNPTP*KKKASSAITPPAT 256
+VT AA+K + P KK +SSA+ PP+T
Sbjct: 18 MVTMTTAAKKVSTGIINKP---KKTSSSAVAPPST 49
>SB_36474| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1608
Score = 27.1 bits (57), Expect = 7.8
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Frame = +2
Query: 116 MDVVTGSVLLGRIVTTRVAARKCRNPLARNPTP-*KKKASSAITPPATVTLQPSGTTLWT 292
MD+ G++ + R V T A +C++ +A +P SAI V Q T
Sbjct: 886 MDLAVGALHVARHVNTNGADTRCQHEVAVADSPVCTHTGESAIPDNQIVASQMEEPQGRT 945
Query: 293 NAYHLKNAQRRFPQKQKPNHT 355
+A HL +A + +P HT
Sbjct: 946 SAQHLADAAEQ--TAHEPPHT 964
>SB_9777| Best HMM Match : PHD (HMM E-Value=0.066)
Length = 203
Score = 27.1 bits (57), Expect = 7.8
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +1
Query: 145 GTHSYNTGCSQKMPEPTCEEPNPVKEEGILCDY 243
G+ N G + K P C +P + + GI CD+
Sbjct: 86 GSVEPNPGPNYKFPCGICSKPVRINQRGIQCDF 118
>SB_6377| Best HMM Match : Exo_endo_phos (HMM E-Value=6.5e-10)
Length = 450
Score = 27.1 bits (57), Expect = 7.8
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +1
Query: 145 GTHSYNTGCSQKMPEPTCEEPNPVKEEGILCDY 243
G+ N G + K P C +P + + GI CD+
Sbjct: 86 GSVEPNPGPNYKFPCGICSKPVRINQRGIQCDF 118
>SB_5823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2324
Score = 27.1 bits (57), Expect = 7.8
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = -2
Query: 187 PAFSGCNPCCNYASQQDTPCDNVHLYRCTREDILSQ 80
P FSG NP Y +Q N+H Y R + Q
Sbjct: 916 PGFSGSNPFQQYQQRQQEAYQNLHGYFDQRRFLADQ 951
>SB_2883| Best HMM Match : Exo_endo_phos (HMM E-Value=2.1e-09)
Length = 598
Score = 27.1 bits (57), Expect = 7.8
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +1
Query: 145 GTHSYNTGCSQKMPEPTCEEPNPVKEEGILCDY 243
G+ N G + K P C +P + + GI CD+
Sbjct: 83 GSVEPNPGPNYKFPCGICSKPVRINQRGIQCDF 115
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,649,496
Number of Sequences: 59808
Number of extensions: 352479
Number of successful extensions: 1254
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1253
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 982083920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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