Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_B10
(470 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g09000.1 68416.m01053 proline-rich family protein 30 0.69
At4g32880.1 68417.m04679 homeobox-leucine zipper transcription f... 28 2.8
At4g06634.1 68417.m01050 zinc finger (C2H2 type) family protein ... 28 2.8
At5g33406.1 68418.m03990 hAT dimerisation domain-containing prot... 28 3.7
At3g57980.1 68416.m06462 DNA-binding bromodomain-containing prot... 27 6.4
At3g47530.1 68416.m05169 pentatricopeptide (PPR) repeat-containi... 27 6.4
At3g17910.1 68416.m02281 surfeit 1 (SURF1) identical to Surfeit ... 27 6.4
At2g33460.1 68415.m04101 p21-rho-binding domain-containing prote... 27 6.4
At4g21650.1 68417.m03137 subtilase family protein contains Pfam ... 27 8.5
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 27 8.5
>At3g09000.1 68416.m01053 proline-rich family protein
Length = 541
Score = 30.3 bits (65), Expect = 0.69
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +2
Query: 128 TGSVLLGRIVTTRVAARKCRNPLARNPTP*KKKASSAITPPATVTLQPSGTT 283
T S R TT + + P NP P + ++ PAT T +PS T
Sbjct: 201 TTSTAAPRTTTTSSGSARSATPTRSNPRPSSASSKKPVSRPATPTRRPSTPT 252
>At4g32880.1 68417.m04679 homeobox-leucine zipper transcription
factor (HB-8) identical to HD-zip transcription factor
(athb-8) (GI:7270235) [Arabidopsis thaliana]
Length = 833
Score = 28.3 bits (60), Expect = 2.8
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = -3
Query: 231 DAFFFHGVGFLASGFRHFLAATRVVTMRPNRTLPVTTSIYIDAPARIFSPSCRRNGH 61
DA F + SGFR ++ + PNRTL + ++ +D +R SC G+
Sbjct: 573 DASFSDDAPIIPSGFRIIPLDSKSEGLSPNRTLDLASA--LDVGSRTAGDSCGSRGN 627
>At4g06634.1 68417.m01050 zinc finger (C2H2 type) family protein
contains Pfam PF00096: Zinc finger, C2H2 type
Length = 387
Score = 28.3 bits (60), Expect = 2.8
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = +1
Query: 94 PRGCIYINGRCHRECPVGTHSYNT-GCSQKMPEPTCEEPNPVKEEGILCDYSAC 252
P+ + G+CH V +++ +K P+ EP P E LC Y C
Sbjct: 33 PQDIVATGGKCHLHKWVTEDTFSRLKEKEKEPDVPEPEPEPTTEILFLCSYDGC 86
>At5g33406.1 68418.m03990 hAT dimerisation domain-containing protein
low similarity to transposase [Fusarium oxysporum f. sp.
lycopersici] GI:3126916; contains Pfam profile PF05699:
hAT family dimerisation domain
Length = 485
Score = 27.9 bits (59), Expect = 3.7
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +2
Query: 245 PPATVTLQPSGTTLWTNAYHLKNAQRRF--PQKQKPNHTLNREN 370
PP + T+ P GTT+ HL NA + P +Q N L N
Sbjct: 434 PPPSSTMSPYGTTMDAMYMHLPNAAMMYAHPYEQLRNGPLQVNN 477
>At3g57980.1 68416.m06462 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 632
Score = 27.1 bits (57), Expect = 6.4
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 145 GTHSYNTGCSQKMPEPTCEEPNPVKEE 225
GT S NT + K+ EP EEPN + E
Sbjct: 159 GTGSENTNRAVKIAEPVDEEPNRIGGE 185
>At3g47530.1 68416.m05169 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 591
Score = 27.1 bits (57), Expect = 6.4
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = -2
Query: 187 PAFSGCNPCCNYASQQDTPCDNVHLYRCTRED 92
P S CN S TPC+ L+R R +
Sbjct: 75 PTLSHCNTMIRAFSLSQTPCEGFRLFRSLRRN 106
>At3g17910.1 68416.m02281 surfeit 1 (SURF1) identical to Surfeit 1
GB:AAF19609 from [Arabidopsis thaliana]
Length = 354
Score = 27.1 bits (57), Expect = 6.4
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = -2
Query: 226 LLLSRGWVPRKW 191
+L++RGWVPR W
Sbjct: 184 ILVNRGWVPRSW 195
>At2g33460.1 68415.m04101 p21-rho-binding domain-containing protein
contains Pfam PF00786: P21-Rho-binding domain
Length = 224
Score = 27.1 bits (57), Expect = 6.4
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +1
Query: 85 REYPRGCIYINGRCHRECPVGTHSYNTGCSQKMPEPTCEEP 207
+E+ +G + G ++ P GT+ G + +P T E+P
Sbjct: 60 QEHEKGQVVSRGNSNKYNPQGTNQRGAGLKELLPSNTNEKP 100
>At4g21650.1 68417.m03137 subtilase family protein contains Pfam
domain, PF00082: Subtilase family; contains Pfam domain,
PF02225: protease associated (PA) domain
Length = 766
Score = 26.6 bits (56), Expect = 8.5
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 122 VVTGSVLLGRIVTTRVAARKCRNPLARNP 208
+ + L G+ TT+VAA CR P + +P
Sbjct: 485 ITAATTLTGQPATTKVAAFSCRGPNSVSP 513
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 26.6 bits (56), Expect = 8.5
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -1
Query: 326 TFFGHSSSGTHLSKALFL 273
TFF +SSG H+ +A+FL
Sbjct: 51 TFFSETSSGQHVPRAVFL 68
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,855,418
Number of Sequences: 28952
Number of extensions: 245203
Number of successful extensions: 730
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 801831960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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