Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_B09
(516 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g60140.1 68416.m06715 glycosyl hydrolase family 1 protein con... 33 0.086
At4g22970.1 68417.m03315 peptidase C50 family protein contains P... 30 1.1
At3g07050.1 68416.m00837 GTP-binding family protein contains Pfa... 29 2.5
At3g10430.1 68416.m01251 F-box family protein contains F-box dom... 28 3.2
At2g40460.1 68415.m04993 proton-dependent oligopeptide transport... 28 3.2
At1g25540.1 68414.m03171 phytochrome and flowering time regulato... 28 3.2
At2g27570.1 68415.m03340 sulfotransferase family protein similar... 27 5.7
At5g60970.1 68418.m07648 TCP family transcription factor, putati... 27 7.5
At5g14950.1 68418.m01754 glycosyl hydrolase family 38 protein si... 27 7.5
At2g44460.1 68415.m05528 glycosyl hydrolase family 1 protein con... 27 7.5
At3g55220.1 68416.m06133 splicing factor, putative contains CPSF... 27 9.9
At3g55200.1 68416.m06131 splicing factor, putative contains CPSF... 27 9.9
>At3g60140.1 68416.m06715 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to Cyanogenic Beta-Glucosidase
(GI:1311386)(pdb:1CBG) [Trifolium Repens]; identical
beta-glucosidase GI:10834547
Length = 577
Score = 33.5 bits (73), Expect = 0.086
Identities = 13/42 (30%), Positives = 26/42 (61%)
Frame = +1
Query: 136 IRYKRQIENNANLFIDKNGWNKSQDGNRPEWIPIQNGYRIQY 261
+ Y ++ NN ++I +NG N + DG +P +++ +RI+Y
Sbjct: 394 LNYIKERYNNMPVYIKENGINDNDDGTKPREEIVKDTFRIEY 435
>At4g22970.1 68417.m03315 peptidase C50 family protein contains Pfam
PF03568: Peptidase family C50
Length = 1773
Score = 29.9 bits (64), Expect = 1.1
Identities = 23/76 (30%), Positives = 35/76 (46%)
Frame = +2
Query: 245 VTEFNTLWTTIIIL*PSFFLIKCSSQTKHRYQVKGKHQLLALVEHHDKQLRNARRIAFQH 424
V++F + +I + L CSS + + K Q L L E K+L+NA+ I +
Sbjct: 911 VSQFGVKFAGFLIPFVNKLLDLCSSSLISQGNLYHKKQCLDLAE---KELQNAKEILIAN 967
Query: 425 QNTTPCVVAIIKLTKT 472
Q CV +KL T
Sbjct: 968 QRDFSCVKCKLKLEVT 983
>At3g07050.1 68416.m00837 GTP-binding family protein contains Pfam
domain, PF01926: GTPase of unknown function
Length = 582
Score = 28.7 bits (61), Expect = 2.5
Identities = 14/44 (31%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Frame = +2
Query: 302 LIKCSSQTKH-RYQVKGKHQLLALV-EHHDKQLRNARRIAFQHQ 427
++K S ++K R +K KH++L V EHH K+ ++A+++ +
Sbjct: 1 MVKRSKKSKSKRVTLKQKHKVLKKVKEHHKKKAKDAKKLGLHRK 44
>At3g10430.1 68416.m01251 F-box family protein contains F-box domain
Pfam:PF00646
Length = 370
Score = 28.3 bits (60), Expect = 3.2
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -2
Query: 440 TGLYSGVEMQFSAHFSIVCRDVPPVLGVDVCP*PG 336
T S + FS +FS+ D+P +D+ P PG
Sbjct: 266 TNKLSDEVVSFSRYFSVTLPDIPLFRSIDILPLPG 300
>At2g40460.1 68415.m04993 proton-dependent oligopeptide transport
(POT) family protein contains Pfam profile: PF00854 POT
family
Length = 583
Score = 28.3 bits (60), Expect = 3.2
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +2
Query: 329 HRYQVKGKHQLLALVEHHDKQLRNARRIAFQHQNTTPCVVAIIKLTK 469
H Y+ GKHQ+ HH R + A + + PC V +++ K
Sbjct: 277 HYYKSNGKHQV-----HHTPVFRFLDKAAIKTSSRVPCTVTKVEVAK 318
>At1g25540.1 68414.m03171 phytochrome and flowering time regulatory
protein (PFT1) PMID: 12815435
Length = 836
Score = 28.3 bits (60), Expect = 3.2
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +2
Query: 320 QTKHRYQVKGKHQLLALVEHHDKQLRNARRIAFQHQNT 433
Q +H+ Q + +HQL L +HH +Q + ++ QHQ T
Sbjct: 721 QQQHQQQQQQQHQLSQL-QHHQQQQQQQQQQQQQHQLT 757
>At2g27570.1 68415.m03340 sulfotransferase family protein similar to
steroid sulfotransferase from [Brassica napus]
GI:3420008, GI:3420006; contains Pfam profile PF00685:
Sulfotransferase domain
Length = 273
Score = 27.5 bits (58), Expect = 5.7
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -2
Query: 230 IHSGRFPS*DLFHPFLSINKFALFS 156
+H + PS D HP LS N LFS
Sbjct: 88 VHRSKHPSHDHHHPLLSNNPHVLFS 112
>At5g60970.1 68418.m07648 TCP family transcription factor, putative
putative basic helix-loop-helix DNA binding protein
TCP2, Arabidopsis thaliana, EMBL:AF072691
Length = 360
Score = 27.1 bits (57), Expect = 7.5
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = +1
Query: 178 IDKNGWNKSQDGNRPEWIPIQNGYRIQYPLDNNYN 282
+DK W K+ + + + ++ Q+PL N YN
Sbjct: 192 LDKGKWIKNDENSNQDHQGFNTNHQQQFPLTNPYN 226
>At5g14950.1 68418.m01754 glycosyl hydrolase family 38 protein similar
to alpha-mannosidase II SP:P27046 from [Mus musculus]
Length = 1173
Score = 27.1 bits (57), Expect = 7.5
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +1
Query: 136 IRYKRQIENNANLFIDKNGWNKSQDGNRPEWIPIQNGYRIQYPL 267
+RYK ++N + D NG+ S+ + IP+Q Y YP+
Sbjct: 883 VRYKTDVDNKKVFYSDLNGFQMSRRETYDK-IPLQGNY---YPM 922
>At2g44460.1 68415.m05528 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to beta-glucosidase 1 (GI:12043529) [Arabidopsis
thaliana]
Length = 582
Score = 27.1 bits (57), Expect = 7.5
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +1
Query: 136 IRYKRQIENNANLFIDKNGWNKSQDGNRPEWIPIQNGYRIQYPLDN 273
+ Y + NN ++I +NG N DG + + + +RI Y D+
Sbjct: 396 LNYIKDKYNNPIVYIKENGINDYDDGTKSREEILNDTFRISYHEDH 441
>At3g55220.1 68416.m06133 splicing factor, putative contains CPSF A
subunit region (PF03178); contains weak WD-40 repeat
(PF00400); similar to Splicing factor 3B subunit 3
(SF3b130)/spliceosomal protein/Splicing factor 3B subunit
3 (SAP 130)(KIAA0017)(SP:Q15393) Homo sapiens,
EMBL:HSAJ1443_1
Length = 1214
Score = 26.6 bits (56), Expect = 9.9
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +1
Query: 427 EYNPVCGSDHQTYKN 471
EY P+CG DH Y++
Sbjct: 1149 EYPPLCGRDHMAYRS 1163
>At3g55200.1 68416.m06131 splicing factor, putative contains CPSF A
subunit region (PF03178); contains weak WD-40 repeat
(PF00400); similar to Splicing factor 3B subunit 3
(SF3b130)/spliceosomal protein/Splicing factor 3B subunit
3 (SAP 130)(KIAA0017)(SP:Q15393) Homo sapiens,
EMBL:HSAJ1443_1
Length = 1214
Score = 26.6 bits (56), Expect = 9.9
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +1
Query: 427 EYNPVCGSDHQTYKN 471
EY P+CG DH Y++
Sbjct: 1149 EYPPLCGRDHMAYRS 1163
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,950,394
Number of Sequences: 28952
Number of extensions: 251527
Number of successful extensions: 578
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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