Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_B07
         (607 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016449-11|AAG23992.1|  353|Caenorhabditis elegans Serpentine r...    28   4.5  
Z68753-2|CAD56618.1|  480|Caenorhabditis elegans Hypothetical pr...    27   7.9  
Z68753-1|CAA92989.1|  499|Caenorhabditis elegans Hypothetical pr...    27   7.9  

>AF016449-11|AAG23992.1|  353|Caenorhabditis elegans Serpentine
           receptor, class t protein7 protein.
          Length = 353

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +3

Query: 21  CFVIVLKKNLKIHRRMMRLQFVMVTVILMSCSEQAT 128
           CF+ +LK NL++    + L   +V ++ +SC+  AT
Sbjct: 55  CFLAILKLNLRVPVYQLMLFLSIVDMLQLSCNSIAT 90


>Z68753-2|CAD56618.1|  480|Caenorhabditis elegans Hypothetical
           protein ZC518.1b protein.
          Length = 480

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -2

Query: 597 PSGSGSDLWFRLSCSVLYSTHPGWYHIVQS 508
           P+ SG DLW  ++  V +  + GW  + ++
Sbjct: 263 PNPSGIDLWLPITTMVQFLVYMGWMKVAEA 292


>Z68753-1|CAA92989.1|  499|Caenorhabditis elegans Hypothetical
           protein ZC518.1a protein.
          Length = 499

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -2

Query: 597 PSGSGSDLWFRLSCSVLYSTHPGWYHIVQS 508
           P+ SG DLW  ++  V +  + GW  + ++
Sbjct: 263 PNPSGIDLWLPITTMVQFLVYMGWMKVAEA 292


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,413,309
Number of Sequences: 27780
Number of extensions: 173871
Number of successful extensions: 476
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)