Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_B06
         (554 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    28   0.80 
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb...    27   2.5  
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    25   5.7  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    25   7.5  
SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subu...    25   7.5  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    25   9.9  

>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 28.3 bits (60), Expect = 0.80
 Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
 Frame = -2

Query: 178 SRNTAWSWFSFLTINDCCRFTFITFV-AWFXXXXXXXXXXSIAFF 47
           S N  W W SF+T   C  + FI  V  WF          ++ +F
Sbjct: 549 SENYNWWWRSFITPGFCGIYVFIFSVFYWFFKISSSSLATAVLYF 593


>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 5/85 (5%)
 Frame = -1

Query: 353 FFQ*YRFLLVHPVFLGSLVDP-EVLVVLADQGTLGLLSFLGHHSILEHQGHHLTLED--- 186
           FF  Y     + +FL  LV+  E       +  L LLS++  H     + HH ++     
Sbjct: 288 FFTIYELCCCNKLFLKKLVEGGEKNGEAPLEALLSLLSYINTHQRQSERSHHFSILSLIL 347

Query: 185 -HLFQEHRVVLVLLFDHKRLLQVHL 114
            H+  + R +L  L D K  + V +
Sbjct: 348 FHIIIDDRSLLYRLTDKKFKISVRV 372


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = +1

Query: 133 RLWSKRRT--RTTRCSWNRWSSRVRWCPWCSRI 225
           ++W  R +  + T+ + N     V WCPW S +
Sbjct: 329 QIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNL 361


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 10/30 (33%), Positives = 21/30 (70%)
 Frame = -1

Query: 170  HRVVLVLLFDHKRLLQVHLYHLCSLVHQLN 81
            H V+ +L  ++  L++V +  +C+L++QLN
Sbjct: 1013 HPVMRMLSCNNASLIRVSMDTVCALIYQLN 1042


>SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subunit
           Rpc82 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 591

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = +3

Query: 252 TEGSLVRKDNQDLRVHKASKEYRVNEEKSVLLEEMAHLAHQVHHAPLQIT*LVY 413
           T+ + +  D+  + V   S   R+N  K  +L + A L H V     + T LVY
Sbjct: 244 TDLNNILDDDNSILVPDLSAHVRINSGKLSVLSKNARLTHWVERRIGKSTSLVY 297


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = +3

Query: 249  ETEGSLVRKDNQDLRVHKASKEYRVNEEKSVLLEEMAHLAHQVHHAPL 392
            ETE  L +K+ + +   K   EYR    K+    E  H  + V   PL
Sbjct: 1057 ETESELNKKEAELVIFQKEITEYRDQLHKAFQNPEKTHNINDVKSGPL 1104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,255,907
Number of Sequences: 5004
Number of extensions: 45193
Number of successful extensions: 136
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)