Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_B06
         (554 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   4.8  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   6.3  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   6.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   6.3  
AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            21   6.3  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   6.3  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   8.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   8.4  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   8.4  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 13/49 (26%), Positives = 20/49 (40%)
 Frame = -1

Query: 260 TLGLLSFLGHHSILEHQGHHLTLEDHLFQEHRVVLVLLFDHKRLLQVHL 114
           T+G +  +  H   +     L  E+ LF    V   L FD++   Q  L
Sbjct: 144 TMGQIREVARHFYHKELQIELVREEILFDTVHVTFKLTFDNRAFTQASL 192


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +2

Query: 155 PGPRGVPGIDG 187
           PGP GVPG  G
Sbjct: 332 PGPPGVPGDHG 342


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +2

Query: 155 PGPRGVPGIDG 187
           PGP GVPG  G
Sbjct: 332 PGPPGVPGDHG 342


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +3

Query: 264  LVRKDNQDLRVHKASKEYRVNEEKSVLLEEMAHL 365
            ++  DN  L + K    +R+N E +   EEM  L
Sbjct: 1062 MIPDDNTSLALPKNEGPFRLNVETAKTNEEMWEL 1095


>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 143 DHKRLLQVHLYHLCSLV 93
           DH   +   +YHLC++V
Sbjct: 33  DHNGSIYWSMYHLCTVV 49


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +2

Query: 155 PGPRGVPGIDG 187
           PGP GVPG  G
Sbjct: 271 PGPPGVPGDHG 281


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = +2

Query: 14  PGGQGAIGMSGEKGDRGFPGRS 79
           P G      SGE   RG  G+S
Sbjct: 380 PSGSSVHSDSGENNSRGHSGQS 401


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 12/51 (23%), Positives = 25/51 (49%)
 Frame = -1

Query: 233 HHSILEHQGHHLTLEDHLFQEHRVVLVLLFDHKRLLQVHLYHLCSLVHQLN 81
           + + L+H     TL+D    + RV + ++   +  LQ     L +++H L+
Sbjct: 295 YQAFLKHLNTEHTLDDRSTAQARVRMQVVSQLEIQLQKERDRLTAMMHHLH 345


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -3

Query: 186 PSIPGTPRGPG 154
           P  P  PRGPG
Sbjct: 393 PCTPSPPRGPG 403


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,238
Number of Sequences: 438
Number of extensions: 3411
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15949830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)