Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_B06
(554 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g02670.1 68416.m00258 proline-rich family protein contains pr... 36 0.014
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 36 0.024
At5g28480.1 68418.m03462 hypothetical protein 35 0.032
At3g06130.1 68416.m00704 heavy-metal-associated domain-containin... 35 0.032
At2g12100.1 68415.m01300 Ulp1 protease family protein contains P... 35 0.032
At1g45090.1 68414.m05169 Ulp1 protease family protein similar to... 35 0.032
At4g25630.1 68417.m03691 fibrillarin 2 (FIB2) identical to fibri... 34 0.055
At1g05850.1 68414.m00612 chitinase-like protein 1 (CTL1) similar... 34 0.073
At5g52470.1 68418.m06510 fibrillarin 1 (FBR1) (FIB1) (SKIP7) ide... 31 0.39
At2g37410.2 68415.m04588 mitochondrial import inner membrane tra... 31 0.39
At2g37410.1 68415.m04587 mitochondrial import inner membrane tra... 31 0.39
At1g44222.1 68414.m05107 hypothetical protein 31 0.39
At5g41120.1 68418.m04999 esterase/lipase/thioesterase family pro... 29 1.6
At3g02930.1 68416.m00288 expressed protein ; expression support... 29 2.8
At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protei... 28 3.6
At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protei... 28 3.6
At5g64580.1 68418.m08116 AAA-type ATPase family protein similar ... 28 4.8
At4g29310.1 68417.m04190 expressed protein 28 4.8
At3g53390.1 68416.m05892 transducin family protein / WD-40 repea... 28 4.8
At3g10300.3 68416.m01236 calcium-binding EF hand family protein ... 28 4.8
At3g10300.2 68416.m01235 calcium-binding EF hand family protein ... 28 4.8
At3g10300.1 68416.m01234 calcium-binding EF hand family protein ... 28 4.8
At1g73860.1 68414.m08552 kinesin motor protein-related similar t... 25 5.2
At5g58000.1 68418.m07256 phosphatase-related weak similarity to ... 27 6.4
At1g47450.1 68414.m05260 expressed protein 27 6.4
At5g41520.1 68418.m05044 40S ribosomal protein S10 (RPS10B) cont... 27 8.4
At5g07510.1 68418.m00860 glycine-rich protein (GRP14) oleosin; g... 27 8.4
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 27 8.4
At1g64450.1 68414.m07306 proline-rich family protein contains pr... 27 8.4
>At3g02670.1 68416.m00258 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 217
Score = 36.3 bits (80), Expect = 0.014
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = +2
Query: 71 GRSGLTGEPGYKGDKGEPAAVVYGQKGEPGPRGVPGIDGLPGS 199
G G+ G PG++ P++ G G PG G+PG+ G+PGS
Sbjct: 87 GNPGIPGSPGFRLPFPFPSSPG-GNPGIPGIPGIPGLPGIPGS 128
Score = 35.9 bits (79), Expect = 0.018
Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
Frame = +2
Query: 8 GRPGGQGAIGM-------SGEKGDRGFPGRSGLTGEPGYKGDKGEPAAVVYGQKGEPGPR 166
G PG G+ G S G+ G PG G+ G PG G G + + PG
Sbjct: 87 GNPGIPGSPGFRLPFPFPSSPGGNPGIPGIPGIPGLPGIPGSPG--FRLPFPFPSSPGGG 144
Query: 167 GVPGIDGLPG 196
+PGI G PG
Sbjct: 145 SIPGIPGSPG 154
Score = 27.5 bits (58), Expect = 6.4
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -3
Query: 195 PGRPSIPGTPRGPGSP 148
PG P IPG P PGSP
Sbjct: 114 PGIPGIPGLPGIPGSP 129
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 35.5 bits (78), Expect = 0.024
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = +2
Query: 8 GRPGGQGAIGMSGEKGDRGFPGRSGLTGEPGYKGDKGEPAAVVYGQK 148
GR GG+G G G +G G GR G G G +G P+ G+K
Sbjct: 505 GRDGGRGRFGSGGGRGRDGGRGRFGSGGGRGSDRGRGRPSFTPQGKK 551
>At5g28480.1 68418.m03462 hypothetical protein
Length = 1230
Score = 35.1 bits (77), Expect = 0.032
Identities = 23/56 (41%), Positives = 24/56 (42%)
Frame = +2
Query: 35 GMSGEKGDRGFPGRSGLTGEPGYKGDKGEPAAVVYGQKGEPGPRGVPGIDGLPGSD 202
G G G G G SG GE G G GE G GE GP G G G G+D
Sbjct: 417 GEGGPSGGDGEGGPSGGDGEGGPSGGDGEGGPS--GGDGEGGPNGADGEGGPNGAD 470
>At3g06130.1 68416.m00704 heavy-metal-associated domain-containing
protein contains Pfam heavy metal associated domain
PF00403
Length = 473
Score = 35.1 bits (77), Expect = 0.032
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Frame = +2
Query: 5 DGRPGGQGAIGMSGEKGD-RGFPGRSGLTG--EPGYKGDKGEPAAVVYGQKGEPGPRG-V 172
DG+ GG G +G+KG+ G P G++G P G + + GQ G GP G +
Sbjct: 300 DGKNGGGGGGPNAGKKGNGGGGPMAGGVSGGFRPMGGGGPQNMSMPMGGQMGMGGPMGNM 359
Query: 173 PGIDGLPGS 199
P + GLP +
Sbjct: 360 PAVQGLPAT 368
>At2g12100.1 68415.m01300 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At5g28270, At2g05450,
At1g45090, At2g16180, At2g06750
Length = 1224
Score = 35.1 bits (77), Expect = 0.032
Identities = 23/56 (41%), Positives = 24/56 (42%)
Frame = +2
Query: 35 GMSGEKGDRGFPGRSGLTGEPGYKGDKGEPAAVVYGQKGEPGPRGVPGIDGLPGSD 202
G G G G G SG GE G G GE G GE GP G G G G+D
Sbjct: 430 GEGGPSGGDGEGGPSGGDGEGGPSGGDGEGGPS--GGDGEGGPNGADGEGGPNGAD 483
>At1g45090.1 68414.m05169 Ulp1 protease family protein similar to
At5g28270, At2g12100, At2g05450, At2g16180, At2g06750;
contains Pfam profile PF02902: Ulp1 protease family,
C-terminal catalytic domain
Length = 1210
Score = 35.1 bits (77), Expect = 0.032
Identities = 23/56 (41%), Positives = 24/56 (42%)
Frame = +2
Query: 35 GMSGEKGDRGFPGRSGLTGEPGYKGDKGEPAAVVYGQKGEPGPRGVPGIDGLPGSD 202
G G G G G SG GE G G GE G GE GP G G G G+D
Sbjct: 421 GEGGPSGGDGEGGPSGGDGEGGPSGGDGEGGPS--GGDGEGGPNGADGEGGPNGAD 474
>At4g25630.1 68417.m03691 fibrillarin 2 (FIB2) identical to
fibrillarin 2 GI:9965655 from [Arabidopsis thaliana]
Length = 320
Score = 34.3 bits (75), Expect = 0.055
Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Frame = +2
Query: 8 GRPGGQGAIGMSGEKGDRGFPGRSGLTGEPGYKG--DKG----EPAAVVYGQKGEPGPRG 169
G GG+G G SG +GD GF G G G G +G D+G G +G GP G
Sbjct: 11 GFSGGRGRGGYSGGRGDGGFSGGRGGGGRGGGRGFSDRGGRGRGRGPPRGGARGGRGPAG 70
Query: 170 VPGIDG 187
G+ G
Sbjct: 71 RGGMKG 76
>At1g05850.1 68414.m00612 chitinase-like protein 1 (CTL1) similar to
class I chitinase GI:7798656 from [Halimolobos perplexa
var. perplexa]; contains Pfam profile PF00182: Chitinase
class I; identical to cDNA chitinase-like protein 1
(CTL1) CTL1-ELP1 allele GI:17226328
Length = 321
Score = 33.9 bits (74), Expect = 0.073
Identities = 11/39 (28%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Frame = -2
Query: 397 ICSGAW-CTWWARWAISSSNTDFSSFTLYSLEALWTRRS 284
+C+ W C+WW+++ + + +D+ F +Y E L+++R+
Sbjct: 41 VCTQGWECSWWSKYCCNQTISDY--FQVYQFEQLFSKRN 77
>At5g52470.1 68418.m06510 fibrillarin 1 (FBR1) (FIB1) (SKIP7)
identical to fibrillarin 1 GI:9965653 from [Arabidopsis
thaliana]; C-terminus identical to SKP1 interacting
partner 7 GI:10716959 from [Arabidopsis thaliana];
contains Pfam domain PF01269: Fibrillarin
Length = 308
Score = 31.5 bits (68), Expect = 0.39
Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = +2
Query: 17 GGQGAIGMSG--EKGDRGFPGRSGLTGEPGYKGDKGEPAAVVYGQKGEPGPRGVPGIDGL 190
GG+G G G + G RGF G G G GD+G G +G P RG P G+
Sbjct: 7 GGRGGGGFRGGRDGGGRGFGGGRSFGG--GRSGDRGRSGPRGRG-RGAPRGRGGPPRGGM 63
Query: 191 PG 196
G
Sbjct: 64 KG 65
>At2g37410.2 68415.m04588 mitochondrial import inner membrane
translocase (TIM17) nearly identical to SP|Q9SP35
Mitochondrial import inner membrane translocase subunit
TIM17 {Arabidopsis thaliana}
Length = 243
Score = 31.5 bits (68), Expect = 0.39
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 26 GAIGMSGEKGDRGFPGRSGLTGEPGYKG 109
G GM G +G +G PG G+ G PG +G
Sbjct: 149 GMQGMPGMQGMQGMPGMPGMQGMPGMQG 176
Score = 31.1 bits (67), Expect = 0.52
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 2 LDGRPGGQGAIGMSGEKGDRGFPGRSGL 85
+ G PG QG GM G G +G PG G+
Sbjct: 150 MQGMPGMQGMQGMPGMPGMQGMPGMQGM 177
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 38 MSGEKGDRGFPGRSGLTGEPGYKGDKGEP 124
M + G +G PG G+ G PG G +G P
Sbjct: 144 MMEDPGMQGMPGMQGMQGMPGMPGMQGMP 172
>At2g37410.1 68415.m04587 mitochondrial import inner membrane
translocase (TIM17) nearly identical to SP|Q9SP35
Mitochondrial import inner membrane translocase subunit
TIM17 {Arabidopsis thaliana}
Length = 243
Score = 31.5 bits (68), Expect = 0.39
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 26 GAIGMSGEKGDRGFPGRSGLTGEPGYKG 109
G GM G +G +G PG G+ G PG +G
Sbjct: 149 GMQGMPGMQGMQGMPGMPGMQGMPGMQG 176
Score = 31.1 bits (67), Expect = 0.52
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 2 LDGRPGGQGAIGMSGEKGDRGFPGRSGL 85
+ G PG QG GM G G +G PG G+
Sbjct: 150 MQGMPGMQGMQGMPGMPGMQGMPGMQGM 177
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 38 MSGEKGDRGFPGRSGLTGEPGYKGDKGEP 124
M + G +G PG G+ G PG G +G P
Sbjct: 144 MMEDPGMQGMPGMQGMQGMPGMPGMQGMP 172
>At1g44222.1 68414.m05107 hypothetical protein
Length = 85
Score = 31.5 bits (68), Expect = 0.39
Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Frame = +2
Query: 8 GRPGGQGAIGM---SGEKGDRGFPGRSGLTGEPGYKGDK---GEPAAVVYGQKG 151
G PG G +GM SG G G GR G+ G PG G G P + G +G
Sbjct: 12 GSPGMLGILGMFGISGMVGRLGILGRLGMMGIPGMLGSHGMLGNPGSNTGGDRG 65
>At5g41120.1 68418.m04999 esterase/lipase/thioesterase family
protein contains Interpro entry IPR000379
Length = 684
Score = 29.5 bits (63), Expect = 1.6
Identities = 17/55 (30%), Positives = 31/55 (56%)
Frame = -1
Query: 320 PVFLGSLVDPEVLVVLADQGTLGLLSFLGHHSILEHQGHHLTLEDHLFQEHRVVL 156
PVFL +L + V+ LA + G + ++G+H +L + H + L H +E ++L
Sbjct: 400 PVFLSTLKNGAVVRSLAGIPSEGPVLYVGNHMLLGMELHAIAL--HFLKERNILL 452
>At3g02930.1 68416.m00288 expressed protein ; expression supported
by MPSS
Length = 806
Score = 28.7 bits (61), Expect = 2.8
Identities = 23/75 (30%), Positives = 37/75 (49%)
Frame = +3
Query: 147 KENQDHAVFLE*MVFQGQMVPLVLQD*MVPQE*KETEGSLVRKDNQDLRVHKASKEYRVN 326
KE +D ++L+ + + + L L+ M+ KETE + +N +LRV K +
Sbjct: 588 KEVEDEVIYLQETLREAKAETLKLKGKMLD---KETEFQSIVHENDELRV-KQDDSLKKI 643
Query: 327 EEKSVLLEEMAHLAH 371
+E S LLEE H
Sbjct: 644 KELSELLEEALAKKH 658
>At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 28.3 bits (60), Expect = 3.6
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 8 GRPGGQGAIGMSGEKGDRGFPGRSGLTGEPGYKGDKG 118
G GG+G G G +G+RG G G+ G +G G
Sbjct: 45 GSYGGRGGYGGGGGRGNRGGGGGGYQGGDRGGRGSGG 81
>At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 28.3 bits (60), Expect = 3.6
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 8 GRPGGQGAIGMSGEKGDRGFPGRSGLTGEPGYKGDKG 118
G GG+G G G +G+RG G G+ G +G G
Sbjct: 45 GSYGGRGGYGGGGGRGNRGGGGGGYQGGDRGGRGSGG 81
>At5g64580.1 68418.m08116 AAA-type ATPase family protein similar to
zinc dependent protease [Arabidopsis thaliana]
GI:7650138; contains Pfam profile PF00004: ATPase AAA
family
Length = 855
Score = 27.9 bits (59), Expect = 4.8
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 288 LRVHKASKEYRVNEEKSVLLEEMAHLAHQVHHAPLQ 395
L+VH +K +R +EK LL+E+A A LQ
Sbjct: 497 LKVHARNKFFRSEDEKEELLQEVAENTEDFTGAELQ 532
>At4g29310.1 68417.m04190 expressed protein
Length = 424
Score = 27.9 bits (59), Expect = 4.8
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -2
Query: 286 SWLSLRTREPSVS-FHSWGTIQSWSTRGTI 200
+WL LR VS + WG +++W RG I
Sbjct: 272 AWLILRPHGTCVSSWKPWGRLEAWRERGAI 301
>At3g53390.1 68416.m05892 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to Dystrophia myotonica-containing WD repeat
motif protein DMR-N9 protein (DMWD) (DM9) (SP:Q08274)
[Mus musculus]; simlar to DMR protein GI:18028289 [Homo
sapiens];
Length = 558
Score = 27.9 bits (59), Expect = 4.8
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 392 TDYLTGILLVRHSQREVVPQCEPGHVKLW 478
T+ L+G++ +Q VV C GH+K+W
Sbjct: 487 TEPLSGLMF---TQESVVTACREGHIKIW 512
>At3g10300.3 68416.m01236 calcium-binding EF hand family protein low
similarity to SP|P12815 Programmed cell death protein 6
(Probable calcium-binding protein ALG-2) {Mus musculus};
contains INTERPRO:IPR002048 calcium-binding EF-hand
domain
Length = 335
Score = 27.9 bits (59), Expect = 4.8
Identities = 17/45 (37%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = +2
Query: 44 GEKGDRGFP-GRSGLTGEPGYKGDKGEPAAVVYGQKGEPGPRGVP 175
G G+ P G SG P Y P AV YG +P P G P
Sbjct: 25 GSTGNNPPPYGSSGSNPPPPYGSSASSPYAVPYG--AQPAPYGAP 67
>At3g10300.2 68416.m01235 calcium-binding EF hand family protein low
similarity to SP|P12815 Programmed cell death protein 6
(Probable calcium-binding protein ALG-2) {Mus musculus};
contains INTERPRO:IPR002048 calcium-binding EF-hand
domain
Length = 324
Score = 27.9 bits (59), Expect = 4.8
Identities = 17/45 (37%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = +2
Query: 44 GEKGDRGFP-GRSGLTGEPGYKGDKGEPAAVVYGQKGEPGPRGVP 175
G G+ P G SG P Y P AV YG +P P G P
Sbjct: 25 GSTGNNPPPYGSSGSNPPPPYGSSASSPYAVPYG--AQPAPYGAP 67
>At3g10300.1 68416.m01234 calcium-binding EF hand family protein low
similarity to SP|P12815 Programmed cell death protein 6
(Probable calcium-binding protein ALG-2) {Mus musculus};
contains INTERPRO:IPR002048 calcium-binding EF-hand
domain
Length = 232
Score = 27.9 bits (59), Expect = 4.8
Identities = 17/45 (37%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = +2
Query: 44 GEKGDRGFP-GRSGLTGEPGYKGDKGEPAAVVYGQKGEPGPRGVP 175
G G+ P G SG P Y P AV YG +P P G P
Sbjct: 25 GSTGNNPPPYGSSGSNPPPPYGSSASSPYAVPYG--AQPAPYGAP 67
>At1g73860.1 68414.m08552 kinesin motor protein-related similar to
kinesin-C GB:AAF04841 from [Strongylocentrotus
purpuratus]
Length = 1030
Score = 25.4 bits (53), Expect(2) = 5.2
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -3
Query: 195 PGRPSIPGTPRGPGSPF*P 139
PG P TPR P SPF P
Sbjct: 8 PGSPYGDSTPRSPFSPFSP 26
Score = 20.6 bits (41), Expect(2) = 5.2
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = -3
Query: 60 RSPFSPLIPIA 28
RSPFSP P++
Sbjct: 18 RSPFSPFSPLS 28
>At5g58000.1 68418.m07256 phosphatase-related weak similarity to CTD
phosphatase-like 3 [Arabidopsis thaliana] GI:22212705;
contains Pfam profiles PF02453: Reticulon, PF00533:
BRCA1 C Terminus (BRCT) domain, PF03031: NLI interacting
factor
Length = 1011
Score = 27.5 bits (58), Expect = 6.4
Identities = 20/62 (32%), Positives = 35/62 (56%)
Frame = -1
Query: 257 LGLLSFLGHHSILEHQGHHLTLEDHLFQEHRVVLVLLFDHKRLLQVHLYHLCSLVHQLNH 78
+GL+ +LG +L+ H +E+ + H+VV V D KR+L++ + +L +HQL
Sbjct: 379 MGLI-YLGLMFVLKSLIHRGMVEE---ERHKVVGVREEDVKRMLRLIMPYLNESLHQLRA 434
Query: 77 FF 72
F
Sbjct: 435 LF 436
>At1g47450.1 68414.m05260 expressed protein
Length = 169
Score = 27.5 bits (58), Expect = 6.4
Identities = 12/43 (27%), Positives = 26/43 (60%)
Frame = +2
Query: 416 LVRHSQREVVPQCEPGHVKLWDGYSLLYIDGNEKAHNQDLGYA 544
++ RE++ + H +L +G+S +Y+ GN A ++D+ Y+
Sbjct: 105 IINECCREILKMGKDCHFRLVEGWSAMYVYGNSIA-SKDIPYS 146
>At5g41520.1 68418.m05044 40S ribosomal protein S10 (RPS10B)
contains similarity to 40S ribosomal protein S10
Length = 180
Score = 27.1 bits (57), Expect = 8.4
Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Frame = +2
Query: 8 GRP---GGQGAIGMSGEKGDRGFPGRSGLTGEPGYKGDKGEPAAVVYGQKGEPGPRGVPG 178
GRP GG G G+R F R G G P G+ G+ A +PG RG G
Sbjct: 100 GRPFGGGGDRPRGPPRGDGERRFGDRDGYRGGPKSGGEYGDKAGAPADY--QPGFRGGAG 157
>At5g07510.1 68418.m00860 glycine-rich protein (GRP14) oleosin;
glycine-rich protein 14 (GRP14) PMID:11431566;
PIR:JQ1063
Length = 193
Score = 27.1 bits (57), Expect = 8.4
Identities = 18/48 (37%), Positives = 20/48 (41%)
Frame = +2
Query: 53 GDRGFPGRSGLTGEPGYKGDKGEPAAVVYGQKGEPGPRGVPGIDGLPG 196
G R F G G + G G+P G G PG G G GLPG
Sbjct: 90 GRRRFGGLRRFGGGRRFGGRFGKPGGGGLGGGGLPGGLGGLGGGGLPG 137
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 27.1 bits (57), Expect = 8.4
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Frame = +2
Query: 32 IGMSGE-KGDRGFPGRSGLT--GEPGYKGDKGEP-AAVVYGQKGEPG 160
+G G G R PG SG+ G GY+ D G P + YG +G G
Sbjct: 54 VGYGGPPSGSRWAPGGSGVGVGGGGGYRADAGRPGSGSGYGGRGGGG 100
>At1g64450.1 68414.m07306 proline-rich family protein contains
proline rich extensins, INTERPRO:IPR0002965
Length = 342
Score = 27.1 bits (57), Expect = 8.4
Identities = 20/62 (32%), Positives = 23/62 (37%)
Frame = -3
Query: 192 GRPSIPGTPRGPGSPF*P*TTAAXXXXXXXXXXXXXXXXXXXXPRSPFSPLIPIAPCPPG 13
G P P PR PGSP P A R+P +P+IP P PP
Sbjct: 188 GNPGPPSFPRNPGSPEFPGNPGAPIIPRNPGSPEFPINPP----RNPGAPVIPRNPNPPV 243
Query: 12 LP 7
P
Sbjct: 244 FP 245
Score = 27.1 bits (57), Expect = 8.4
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -3
Query: 195 PGRPSIPGTPRGPGSP 148
PG P P PR PGSP
Sbjct: 205 PGNPGAPIIPRNPGSP 220
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,154,271
Number of Sequences: 28952
Number of extensions: 251310
Number of successful extensions: 883
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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