Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_B05
         (415 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp...    27   0.87 
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    25   3.5  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    25   6.1  
SPAC27F1.05c |||aminotransferase class-III, unknown specificty|S...    24   8.1  
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ...    24   8.1  

>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
           Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 27.5 bits (58), Expect = 0.87
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
 Frame = +3

Query: 141 SQNVVSSPLSAEYXXXXXXXXXXDPA----HEELLTSLDIPNDDCIRSSFTS-ITSNLKS 305
           S+ V+SSP S +             +    HE+LLT  ++ N   I S FTS + S L +
Sbjct: 102 SRKVISSPYSPKQTHTVLKRLYDRQSVISDHEKLLTPQNVSNSSQILSPFTSLLPSTLST 161

Query: 306 IPGITLNIA 332
           +    L+++
Sbjct: 162 LKDTPLSVS 170


>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = +2

Query: 263 YSFLIHFNYIQFEVYTRY 316
           ++F+I FNYI+  +Y+R+
Sbjct: 431 HAFIIKFNYIKPSIYSRF 448


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = +3

Query: 21  LLISLFLSLPVKSSELTMDAKAISSAVAKFSAKFLNELD 137
           +L SLF +L  +SSEL      +S+A+   + + ++E+D
Sbjct: 445 MLGSLFYNLRNESSELYSRGSVLSNAIVFTAIQTMSEVD 483


>SPAC27F1.05c |||aminotransferase class-III, unknown
           specificty|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 484

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 45  LPVKSSELTMDAKAISSAVAKFSAK 119
           L +  ++L     A+ SAVAKF AK
Sbjct: 450 LTIPEADLDEGLSAVESAVAKFDAK 474


>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 797

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = -1

Query: 181 KYSAESGEDTTF*LLSSSFKNLAENLATADEIALASMVNSELFTG 47
           +++AES + T++     SF+ L E     + +    +  S L TG
Sbjct: 700 EFTAESDDTTSYDEPLVSFRELVEEFCAENSLLFVPLRRSHLSTG 744


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,482,235
Number of Sequences: 5004
Number of extensions: 24446
Number of successful extensions: 70
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)