Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_B05
         (415 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1068 + 30552935-30553234,30553424-30553623,30553738-30554122     32   0.21 
01_07_0246 + 42253379-42253642,42253846-42254084,42254267-422544...    30   0.64 
07_01_0476 - 3593555-3594253,3594684-3594850,3594866-3594964,359...    27   4.5  
04_04_0671 - 27157692-27158620,27158711-27158828,27158967-271591...    27   7.8  

>04_04_1068 + 30552935-30553234,30553424-30553623,30553738-30554122
          Length = 294

 Score = 31.9 bits (69), Expect = 0.21
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
 Frame = +3

Query: 210 DPAHEELLTSLDIPNDDCIRSS----FTSITSNLKSIPGITLNIANKVY-LKEGPYELHS 374
           D   E L  SLD     C RS     +  I   +K I G +      +Y + EGP+E+H 
Sbjct: 52  DGDSEALALSLDQSQGSCFRSREKYLYVQIDVEIKLIEGDSAGTVCTIYTISEGPWEIHD 111

Query: 375 EL 380
           E+
Sbjct: 112 EI 113


>01_07_0246 +
           42253379-42253642,42253846-42254084,42254267-42254471,
           42254719-42254787,42254869-42255055,42255760-42255926,
           42256350-42257045
          Length = 608

 Score = 30.3 bits (65), Expect = 0.64
 Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = +3

Query: 216 AHEELLTSLDIPNDDCIRSSFTSITSNLKSIPGI-TLNIANKVYLKEGP--YELHSELK 383
           +H E L ++     D I  SF  ITS L  +PG   LN A  +YL+  P   ELH  L+
Sbjct: 277 SHSEWLNTVQA-EPDVISMSFIPITSLLNGVPGCGFLNHAINLYLRYKPRVEELHQFLE 334


>07_01_0476 -
           3593555-3594253,3594684-3594850,3594866-3594964,
           3595620-3595806,3595880-3595948,3596551-3596752,
           3597124-3597362,3598374-3598637
          Length = 641

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +3

Query: 216 AHEELLTSLDIPNDDCIRSSFTSITSNLKSIPGI-TLNIANKVYLK 350
           +H E L ++     D I  SF  ITS L  +PG   LN A  +YL+
Sbjct: 276 SHSEWLNTVQA-EPDVISMSFIPITSLLNGVPGCGFLNHAINLYLR 320


>04_04_0671 -
           27157692-27158620,27158711-27158828,27158967-27159156,
           27159281-27159415,27159537-27159634,27160034-27160206,
           27160299-27160772,27161464-27161518
          Length = 723

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 410 ASNTVTGIFLQFGMQFIWSLFQ 345
           A   V G    FG+ F+WS FQ
Sbjct: 266 AKKQVRGFLRYFGISFLWSFFQ 287


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,699,162
Number of Sequences: 37544
Number of extensions: 130385
Number of successful extensions: 296
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 296
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)