Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_B05
         (415 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g26390.1 68415.m03167 serpin, putative / serine protease inhi...    31   0.23 
At1g11890.1 68414.m01371 vesicle transport protein SEC22, putati...    29   1.2  
At5g09290.1 68418.m01076 3'(2'),5'-bisphosphate nucleotidase, pu...    29   1.6  
At1g14780.1 68414.m01767 expressed protein                             29   1.6  
At4g24290.2 68417.m03488 expressed protein                             28   2.9  
At4g21550.1 68417.m03113 transcriptional factor B3 family protei...    27   6.6  

>At2g26390.1 68415.m03167 serpin, putative / serine protease
           inhibitor, putative similar to phloem serpin-1
           [Cucurbita maxima] GI:9937311; contains Pfam profile
           PF00079: Serpin (serine protease inhibitor)
          Length = 389

 Score = 31.5 bits (68), Expect = 0.23
 Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 1/109 (0%)
 Frame = +3

Query: 63  ELTMDAKAISSAVAKFSAKFLN-ELDKSQNVVSSPLSAEYXXXXXXXXXXDPAHEELLTS 239
           EL    +  ++ VA+ + K +  ++    NVV SP+S                 EE+L+ 
Sbjct: 2   ELGKSIENQNNVVARLAKKVIETDVANGSNVVFSPMSINVLLSLIAAGSNPVTKEEILSF 61

Query: 240 LDIPNDDCIRSSFTSITSNLKSIPGITLNIANKVYLKEGPYELHSELKE 386
           L  P+ D + +    I         + L+ A+ V++ +  Y L    KE
Sbjct: 62  LMSPSTDHLNAVLAKIADGGTERSDLCLSTAHGVWIDKSSY-LKPSFKE 109


>At1g11890.1 68414.m01371 vesicle transport protein SEC22, putative
           identified as SEC22 by Raikhel, NV, et al. in Plant
           Physiol. 124: 1558-69 (2000); similar to vesicle
           trafficking protein gb|U91538 from Mus musculus; ESTs
           gb|F15494 and gb|F14097 come from this gene
          Length = 218

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 17/66 (25%), Positives = 29/66 (43%)
 Frame = +3

Query: 213 PAHEELLTSLDIPNDDCIRSSFTSITSNLKSIPGITLNIANKVYLKEGPYELHSELKEDA 392
           P  E L    D+P+ D  +    ++  NL        N A+++ ++ GPY  H  ++   
Sbjct: 15  PLAEGLDDGRDLPDSDMYKQQVKALFKNLSR----GQNDASRMSVETGPYVFHYIIEGRV 70

Query: 393 CYSV*C 410
           CY   C
Sbjct: 71  CYLTMC 76


>At5g09290.1 68418.m01076 3'(2'),5'-bisphosphate nucleotidase,
           putative / inositol polyphosphate 1-phosphatase,
           putative similar to SP|Q42546 3'(2'),5'-bisphosphate
           nucleotidase (EC 3.1.3.7) {Arabidopsis thaliana};
           contains Pfam profile PF00459: Inositol monophosphatase
           family
          Length = 345

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 15/35 (42%), Positives = 23/35 (65%)
 Frame = +3

Query: 279 TSITSNLKSIPGITLNIANKVYLKEGPYELHSELK 383
           T + S+ K IP I  +IANK+ +K  P  +HS++K
Sbjct: 217 TFVESSHKPIP-IHSSIANKLGIKAPPLRIHSQVK 250


>At1g14780.1 68414.m01767 expressed protein
          Length = 627

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +3

Query: 216 AHEE-LLTSLDIPNDDCIRSSFTSITSNLKSIPGI-TLNIANKVYLKEGP 359
           +H E L+T  D P  D I  +F  ITS LK +PG   L+ A  +YL+  P
Sbjct: 283 SHSEWLITVPDKP--DAINFNFIPITSLLKDVPGSGLLSHAMSLYLRYKP 330


>At4g24290.2 68417.m03488 expressed protein
          Length = 606

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = +3

Query: 219 HEELLTSLDIPNDDCIRSSFTSITSNLKSIPGI-TLNIANKVYLKEGP--YELHSELK 383
           H E L ++ +   D I  SF  ITS L  +PG   L+ A  +YL+  P   ELH  L+
Sbjct: 277 HNEWLQTVQM-EPDVISMSFIPITSLLNGVPGSGFLSHAINLYLRYKPPIEELHQFLE 333


>At4g21550.1 68417.m03113 transcriptional factor B3 family protein
           low similarity to SP|Q01593 Abscisic acid-insensitive
           protein 3 {Arabidopsis thaliana}, SP|P37398 Viviparous
           protein homolog {Oryza sativa}; contains Pfam profile
           PF02362: B3 DNA binding domain
          Length = 721

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 213 PAHEELLTSLDIPNDDCIRSSFTSITSN 296
           P   +   S  +P+DD ++SSFTS +S+
Sbjct: 665 PGSNKTTKSETLPHDDTVKSSFTSPSSS 692


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,435,098
Number of Sequences: 28952
Number of extensions: 117726
Number of successful extensions: 287
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 287
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 625471056
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)