Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_B03
         (429 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos...   127   8e-31
SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S...   124   6e-30
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi...    27   1.6  
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    26   2.9  
SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch...    25   3.8  
SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac...    25   3.8  
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni...    25   5.0  
SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar...    25   6.6  
SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe...    25   6.6  
SPAC31G5.10 |eta2||Myb family transcriptional regulator Eta2|Sch...    24   8.7  

>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 187

 Score =  127 bits (306), Expect = 8e-31
 Identities = 66/113 (58%), Positives = 82/113 (72%), Gaps = 2/113 (1%)
 Frame = +3

Query: 9   KKPTREGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGGEILTFDQLALRA 188
           K  + EG   V+VGTV++D RL TVPK++VAAL  T+ ARARIL AGGE+LT DQLALRA
Sbjct: 73  KSASLEGKTTVIVGTVTDDERLLTVPKLSVAALRFTKSARARILKAGGEVLTLDQLALRA 132

Query: 189 PTGRKTVLVQGRRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--EHARPSRRS 341
           PTG  TVL++G+++AREA RHFG     P  H  PYVR++G   E AR  R+S
Sbjct: 133 PTGSNTVLLRGKKHAREAYRHFG---FGPHKHKAPYVRSEGRKFERARGRRKS 182


>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score =  124 bits (299), Expect = 6e-30
 Identities = 64/113 (56%), Positives = 81/113 (71%), Gaps = 2/113 (1%)
 Frame = +3

Query: 9   KKPTREGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGGEILTFDQLALRA 188
           K  + +    VVVGTV++D R+ TVPK+++AAL  T+ ARARIL AGGE+LT DQLALRA
Sbjct: 73  KSASSQNKTTVVVGTVTDDERMLTVPKLSIAALRFTKSARARILKAGGEVLTLDQLALRA 132

Query: 189 PTGRKTVLVQGRRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--EHARPSRRS 341
           PTG  TVLV+G+++AREA RHFG     P  H  PYVR++G   E AR  R+S
Sbjct: 133 PTGSNTVLVRGKKHAREAYRHFG---FGPHKHKAPYVRSEGRKFERARGRRKS 182


>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
 Frame = +3

Query: 30  LIAVVVGTVSNDVRLY-TVPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGRKT 206
           L+ +VV  ++NDVRL+  V +  +   H  E   A  L A   +++   +     T  KT
Sbjct: 694 LLKMVVPLITNDVRLWRIVARYYLWRRHFAESLNA-TLKAYRILISSPNVTSDEATWNKT 752

Query: 207 VLVQGRRNAREAVRHFGPAPG 269
             V+G     EA  + G  PG
Sbjct: 753 --VEGALELVEAYANLGEMPG 771


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
           Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = +3

Query: 195 GRKTVLVQGRRNAREAVRHFGPAPGA-PR 278
           G    L Q RR     V HFG APG+ PR
Sbjct: 844 GESFDLSQKRRRGEPVVHHFGFAPGSTPR 872


>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
           L27|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 136

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 15/56 (26%), Positives = 24/56 (42%)
 Frame = +3

Query: 168 DQLALRAPTGRKTVLVQGRRNAREAVRHFGPAPGAPRSHTKPYVRTKGHEHARPSR 335
           DQ +   P G   V+    R   +  +  G    A RS  KP+++   + H  P+R
Sbjct: 30  DQGSKSHPFGH-AVVAGVERYPLKVTKSMGAKRIAKRSRVKPFIKVINYNHLMPTR 84


>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
           L27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 136

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 15/56 (26%), Positives = 24/56 (42%)
 Frame = +3

Query: 168 DQLALRAPTGRKTVLVQGRRNAREAVRHFGPAPGAPRSHTKPYVRTKGHEHARPSR 335
           DQ +   P G   V+    R   +  +  G    A RS  KP+++   + H  P+R
Sbjct: 30  DQGSKSHPFGH-AVVAGVERYPLKVTKSMGAKRIARRSRVKPFIKVVNYNHLMPTR 84


>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
           8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 230

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +3

Query: 168 DQLALRAPTGRKTVLVQGRRNAREAVRHFGPA 263
           D++  + P G K  + Q ++  R A++H+  A
Sbjct: 120 DEILPKEPAGSKEAMQQKKKEKRAALKHYREA 151


>SPAC343.18 |rfp2||ubiquitin-protein ligase E3
           Rfp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 205

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = +3

Query: 63  DVRLYTVPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGRKTVLVQGRRNARE 239
           D  L  VP +      VT   R  +   GG      +   R+ T R+T+L  G RN+R+
Sbjct: 61  DANLSNVPTINSIPSPVT---RPPVAVGGGIFYGARRTRNRSQTQRRTLLENGFRNSRK 116


>SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 523

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +1

Query: 193 LDVRQYWFRVAVMLVRQFVTSGRRLVHLVHILNHTCAPRDTS 318
           L+ R+ +++     + + +  G R + LV  +N  C P DT+
Sbjct: 161 LEYRRAFYKALRERIERLIKEGNRKIILVGDVNILCNPIDTA 202


>SPAC31G5.10 |eta2||Myb family transcriptional regulator
           Eta2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 290 TIRAHQGTRARTAEPSLQC 346
           TI  +QGTR+    P+L C
Sbjct: 8   TINENQGTRSNLESPTLSC 26


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,571,788
Number of Sequences: 5004
Number of extensions: 28607
Number of successful extensions: 68
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)