Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_B03
         (429 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1667 + 28484069-28484071,28484151-28484240,28484339-284844...   145   1e-35
05_01_0401 + 3169979-3169981,3170071-3170160,3170556-3170684,317...   143   5e-35
03_02_0954 - 12687373-12687582,12688885-12689067,12689160-126892...   128   2e-30
02_05_1052 + 33770355-33773981,33774217-33774336,33774880-337749...    27   6.4  
02_04_0324 + 22032748-22032895,22035274-22035593,22035709-22036797     27   6.4  
09_04_0567 + 18585556-18586113                                         27   8.5  
03_02_0926 + 12448032-12448231,12448727-12448815,12449956-124500...    27   8.5  

>07_03_1667 +
           28484069-28484071,28484151-28484240,28484339-28484491,
           28484575-28484757,28486137-28486295
          Length = 195

 Score =  145 bits (352), Expect = 1e-35
 Identities = 69/104 (66%), Positives = 83/104 (79%)
 Frame = +3

Query: 33  IAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGRKTVL 212
           IAV+VGTV++D R+Y VP M VAAL  TE ARARI+ AGGE LTFDQLALRAP G+ TVL
Sbjct: 86  IAVIVGTVTDDKRIYEVPAMKVAALRFTETARARIINAGGECLTFDQLALRAPLGQNTVL 145

Query: 213 VQGRRNAREAVRHFGPAPGAPRSHTKPYVRTKGHEHARPSRRSN 344
           ++G +NAREAV+HFGPAPG P S+TKPYVR+KG +  +   R N
Sbjct: 146 LRGPKNAREAVKHFGPAPGVPHSNTKPYVRSKGRKFEKARGRRN 189


>05_01_0401 +
           3169979-3169981,3170071-3170160,3170556-3170684,
           3170814-3170999,3172001-3172159
          Length = 188

 Score =  143 bits (347), Expect = 5e-35
 Identities = 69/107 (64%), Positives = 81/107 (75%)
 Frame = +3

Query: 24  EGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGRK 203
           E  IAV+VGTV++D R+  +PKM V AL  TE ARARI+ AGGE LTFDQLALRAP G  
Sbjct: 76  ENNIAVIVGTVTDDKRIQEIPKMKVTALRFTETARARIVNAGGECLTFDQLALRAPLGEN 135

Query: 204 TVLVQGRRNAREAVRHFGPAPGAPRSHTKPYVRTKGHEHARPSRRSN 344
           TVL++G +NAREAVRHFG APG P SHTKPYVR+KG +  +   R N
Sbjct: 136 TVLLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRN 182


>03_02_0954 -
           12687373-12687582,12688885-12689067,12689160-12689288,
           12689375-12689464,12689548-12689550
          Length = 204

 Score =  128 bits (308), Expect = 2e-30
 Identities = 69/125 (55%), Positives = 84/125 (67%), Gaps = 17/125 (13%)
 Frame = +3

Query: 21  REGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGR 200
           +E  IAV+VGTV++D R+Y VP M VAAL  TE ARARI+  GGE LTFDQLALRAP G+
Sbjct: 74  KENQIAVIVGTVTDDKRVYEVPAMKVAALRFTETARARIVNTGGECLTFDQLALRAPLGQ 133

Query: 201 KT-----------------VLVQGRRNAREAVRHFGPAPGAPRSHTKPYVRTKGHEHARP 329
            T                 VL++G +NAREAV+HFGPAPG P S+TKPYVR+KG +  + 
Sbjct: 134 NTYIAMPEILTIDNFALLQVLLRGPKNAREAVKHFGPAPGVPHSNTKPYVRSKGRKFEKA 193

Query: 330 SRRSN 344
             R N
Sbjct: 194 RGRRN 198


>02_05_1052 +
           33770355-33773981,33774217-33774336,33774880-33774996,
           33775322-33775411,33775971-33776078,33776304-33776351
          Length = 1369

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 20/59 (33%), Positives = 31/59 (52%)
 Frame = -3

Query: 271 APGAGPK*RTASRALRRP*TSTVLRPVGARRANWSNVRISPPAAKMRARAFSVTCSAAT 95
           A  AG + R +    RRP T + L P G+R A  S+ RIS P +   A +   + S+++
Sbjct: 66  AEAAGSQARRSQSTERRPATPSRLSPGGSRAAAPSS-RISAPTSPSSAPSSPSSSSSSS 123


>02_04_0324 + 22032748-22032895,22035274-22035593,22035709-22036797
          Length = 518

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = +3

Query: 42  VVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGGEILTFDQLAL 182
           ++G++  DV   ++  + VAA+ V  + R  +   GG +L   Q+A+
Sbjct: 329 ILGSIITDV--VSISSVAVAAVVVDRRGRRTLFMVGGAVLILCQVAM 373


>09_04_0567 + 18585556-18586113
          Length = 185

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = +1

Query: 202 RQYWFRVAVMLVRQFVTSGRRLVHLVHILN-HTCAPRDTSTHGR 330
           R  W RV     R+F  +  R   L HIL  HT + R  +  GR
Sbjct: 12  RHPWHRVTAAAWRKFTDADARAAPLSHILEVHTLSRRVDAGSGR 55


>03_02_0926 +
           12448032-12448231,12448727-12448815,12449956-12450096,
           12450181-12450283,12450386-12450481,12450580-12450654,
           12450754-12450823,12451028-12451111
          Length = 285

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +3

Query: 15  PTREGLIAVVVGTVSN-DVRLYTVPKMTVAALHVTEKARARILAAGG 152
           PT E +  +V   +SN D    T+ KMTV  +     A  R+L  GG
Sbjct: 95  PT-ENICKIVKAIISNSDYLSMTMKKMTVIHISQVNAANERMLGGGG 140


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,455,880
Number of Sequences: 37544
Number of extensions: 239435
Number of successful extensions: 754
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)