Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_B03
(429 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_1564| Best HMM Match : No HMM Matches (HMM E-Value=.) 114 3e-26
SB_6617| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.71
SB_12307| Best HMM Match : Death (HMM E-Value=0.00097) 29 1.6
SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_5475| Best HMM Match : Endonuclease_7 (HMM E-Value=0.084) 28 3.8
SB_45618| Best HMM Match : Ribosomal_L27e (HMM E-Value=0) 27 6.6
SB_32577| Best HMM Match : PH (HMM E-Value=7e-17) 27 8.7
SB_7411| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
>SB_1564| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1066
Score = 114 bits (274), Expect = 3e-26
Identities = 60/112 (53%), Positives = 73/112 (65%), Gaps = 5/112 (4%)
Frame = +3
Query: 6 MKKPTREGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGGEILTFDQLALR 185
MK + I VVVG++++D R++ VP + + AL +E ARARIL AGGEILTFDQLALR
Sbjct: 177 MKASGHKDKICVVVGSITDDKRIFEVPALKICALRFSETARARILKAGGEILTFDQLALR 236
Query: 186 APTGRKTVLVQGRRNAREAVRHFGPAPGAPRSHTK-----PYVRTKGHEHAR 326
AP G+ TVL+QG R AREA RH G APG P S T Y+ T G R
Sbjct: 237 APLGQNTVLLQGPRKAREAERHMGLAPGVPHSDTNWCGDLDYIGTDGDAQCR 288
>SB_6617| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 30.3 bits (65), Expect = 0.71
Identities = 20/50 (40%), Positives = 25/50 (50%)
Frame = -2
Query: 329 RPCVLVSLGAHVWFSM*TRCTRRRPEVTNCLTSITATLNQYCLTSSGRTE 180
RPC+ H + T T P + CLTSIT+T Q CLTS T+
Sbjct: 55 RPCLTSMTSTHPQPYL-TSITTTEPPL--CLTSITSTDPQLCLTSITSTD 101
Score = 27.9 bits (59), Expect = 3.8
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = -2
Query: 242 CLTSITATLNQYCLTSSGRTE 180
CLTSIT+T Q CLTS T+
Sbjct: 21 CLTSITSTDPQLCLTSITSTD 41
Score = 27.5 bits (58), Expect = 5.0
Identities = 21/50 (42%), Positives = 25/50 (50%)
Frame = -2
Query: 329 RPCVLVSLGAHVWFSM*TRCTRRRPEVTNCLTSITATLNQYCLTSSGRTE 180
RPC L S+ T T P+ CLTSIT+T Q CLTS T+
Sbjct: 103 RPC-LTSITLTYPRPYLTSITSTHPQP--CLTSITSTDPQPCLTSIKSTD 149
Score = 27.5 bits (58), Expect = 5.0
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = -2
Query: 242 CLTSITATLNQYCLTSSGRTE 180
CLTSIT+T Q CLT TE
Sbjct: 201 CLTSITSTDPQPCLTGINTTE 221
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = -2
Query: 242 CLTSITATLNQYCLTSSGRTE 180
CLTSIT+T Q CLTS T+
Sbjct: 9 CLTSITSTDPQPCLTSITSTD 29
Score = 26.6 bits (56), Expect = 8.7
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = -2
Query: 242 CLTSITATLNQYCLTS 195
CLTSIT+T Q CLTS
Sbjct: 237 CLTSITSTNPQPCLTS 252
>SB_12307| Best HMM Match : Death (HMM E-Value=0.00097)
Length = 1366
Score = 29.1 bits (62), Expect = 1.6
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +1
Query: 292 HTCAPRDTSTHGRAVAPMS 348
H CA STHGRAVA M+
Sbjct: 14 HACATETVSTHGRAVALMA 32
>SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1202
Score = 27.9 bits (59), Expect = 3.8
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +3
Query: 150 GEILTFDQLALRAPTGRKTVLVQGRRNAREAVRHFGPAPGAPRS 281
GE+++ D++ +A R + N EA R F P PG P S
Sbjct: 614 GEMMSDDEMKPKARCKRSQSTPIHQENREEAHRPFTPQPGRPLS 657
>SB_5475| Best HMM Match : Endonuclease_7 (HMM E-Value=0.084)
Length = 682
Score = 27.9 bits (59), Expect = 3.8
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +3
Query: 156 ILTFDQLALRAPTGRKTVLVQGRRNAREAVRHFGPAPGAPRSHTKPYVRT 305
I+T + AL A GR +V GRR AVR AP ++ K Y++T
Sbjct: 58 IVTGRRFALTAVVGRVAGIVTGRRFILTAVRVERFAPKERQTALKGYLKT 107
>SB_45618| Best HMM Match : Ribosomal_L27e (HMM E-Value=0)
Length = 168
Score = 27.1 bits (57), Expect = 6.6
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = +3
Query: 156 ILTFDQLALRAPTGRKTVLVQG-RRNAREAVRHFGPAPGAPRSHTKPYVRTKGHEHARPS 332
I +D + P G LV G R + + G A RS KP+V+ + H P+
Sbjct: 26 IKNYDDGSSDKPYGH--ALVAGVARYPLKVTKRMGKKRTAKRSKVKPFVKVFNYNHLMPT 83
Query: 333 RRS 341
R S
Sbjct: 84 RYS 86
>SB_32577| Best HMM Match : PH (HMM E-Value=7e-17)
Length = 1248
Score = 26.6 bits (56), Expect = 8.7
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 234 REAVRHFGPAPGAPRSHTKPYVRTKGHEHARP 329
++AV+ PAP APR P V+ G + P
Sbjct: 978 KDAVKPSRPAPPAPRRPPPPAVKQDGEKEVLP 1009
>SB_7411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 168
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +3
Query: 27 GLIAVVVGTVSNDVRLYTVPKM 92
G +A++V S VR+YTVPK+
Sbjct: 79 GGLALIVSLYSPSVRIYTVPKI 100
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,835,088
Number of Sequences: 59808
Number of extensions: 261226
Number of successful extensions: 718
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 826502419
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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