Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_B03
(429 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g05590.1 68416.m00621 60S ribosomal protein L18 (RPL18B) simi... 142 7e-35
At5g27850.1 68418.m03341 60S ribosomal protein L18 (RPL18C) 60S ... 139 6e-34
At2g47570.1 68415.m05936 60S ribosomal protein L18 (RPL18A) 135 1e-32
At2g18850.1 68415.m02196 SET domain-containing protein low simil... 28 2.3
At3g28360.1 68416.m03544 ABC transporter family protein similar ... 28 3.1
At3g09000.1 68416.m01053 proline-rich family protein 27 4.1
At1g61900.2 68414.m06984 expressed protein contains similarity t... 27 4.1
At1g61900.1 68414.m06983 expressed protein contains similarity t... 27 4.1
At3g28415.1 68416.m03551 P-glycoprotein, putative contains ATP-b... 27 7.1
At3g28390.1 68416.m03547 P-glycoprotein, putative similar to P-g... 27 7.1
At1g57820.2 68414.m06561 zinc finger (C3HC4-type RING finger) fa... 26 9.4
At1g57820.1 68414.m06560 zinc finger (C3HC4-type RING finger) fa... 26 9.4
>At3g05590.1 68416.m00621 60S ribosomal protein L18 (RPL18B) similar
to GB:P42791
Length = 187
Score = 142 bits (345), Expect = 7e-35
Identities = 68/109 (62%), Positives = 86/109 (78%), Gaps = 2/109 (1%)
Frame = +3
Query: 21 REGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGR 200
+E IAV+VGT+++D+R++ +P M V AL TE+ARARI AGGE LTFDQLALRAP G+
Sbjct: 74 KEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQ 133
Query: 201 KTVLVQGRRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--EHARPSRRS 341
TVL++G +N+REAV+HFGPAPG P SH+KPYVR KG E AR R+S
Sbjct: 134 NTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRAKGRKFEKARGKRKS 182
>At5g27850.1 68418.m03341 60S ribosomal protein L18 (RPL18C) 60S
ribosomal protein L18, Arabidopsis thaliana,
SWISSPROT:RL18_ARATH
Length = 187
Score = 139 bits (337), Expect = 6e-34
Identities = 67/109 (61%), Positives = 86/109 (78%), Gaps = 2/109 (1%)
Frame = +3
Query: 21 REGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGR 200
++ IAV+VGT+++D+R++ +P M V AL TE+ARARI AGGE LTFDQLALRAP G+
Sbjct: 74 KDDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQ 133
Query: 201 KTVLVQGRRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--EHARPSRRS 341
TVL++G +N+REAV+HFGPAPG P S+TKPYVR KG E AR R+S
Sbjct: 134 NTVLLRGPKNSREAVKHFGPAPGVPHSNTKPYVRHKGRKFEKARGKRKS 182
>At2g47570.1 68415.m05936 60S ribosomal protein L18 (RPL18A)
Length = 135
Score = 135 bits (326), Expect = 1e-32
Identities = 70/110 (63%), Positives = 81/110 (73%), Gaps = 3/110 (2%)
Frame = +3
Query: 21 REGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPT-G 197
++G IAV+VGTV++DVR+ VP +TV AL TE ARARI AGGE LTFDQLAL PT
Sbjct: 21 KDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIHKAGGECLTFDQLALPCPTWS 80
Query: 198 RKTVLVQGRRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--EHARPSRRS 341
TVL++G +N REAV+HFGPAPG P SHTKPYVR G E AR RRS
Sbjct: 81 ENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTGKKIEIARGRRRS 130
>At2g18850.1 68415.m02196 SET domain-containing protein low
similarity to ribulose-1,5-bisphosphate
carboxylase/oxygenase small subunit N-methyltransferase
I [Spinacia oleracea] GI:3403236; contains Pfam profile
PF00856: SET domain
Length = 448
Score = 28.3 bits (60), Expect = 2.3
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -1
Query: 231 HYGDPEPVLSYVQWAHG 181
HYG P P+L+Y++ AHG
Sbjct: 346 HYGLPTPLLNYLRKAHG 362
>At3g28360.1 68416.m03544 ABC transporter family protein similar to
P-glycoprotein homologue GI:2292907 from [Hordeum
vulgare subsp. vulgare]
Length = 1158
Score = 27.9 bits (59), Expect = 3.1
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 153 EILTFDQLALRAPTGRKTVLVQGRRNAREAV 245
E L FD L L+ P+G+ LV G + + V
Sbjct: 290 ETLIFDDLCLKIPSGKTVALVGGSGSGKSTV 320
>At3g09000.1 68416.m01053 proline-rich family protein
Length = 541
Score = 27.5 bits (58), Expect = 4.1
Identities = 25/74 (33%), Positives = 32/74 (43%)
Frame = -3
Query: 244 TASRALRRP*TSTVLRPVGARRANWSNVRISPPAAKMRARAFSVTCSAATVILGTV*SLT 65
T +R P TST RPV R SN R S P ++ A T S A T S +
Sbjct: 161 TPTRRSTTPTTSTS-RPVTTRA---SNSRSSTPTSRATLTAARATTSTAAPRTTTTSSGS 216
Query: 64 SLETVPTTTAIKPS 23
+ PT + +PS
Sbjct: 217 ARSATPTRSNPRPS 230
>At1g61900.2 68414.m06984 expressed protein contains similarity to
glutamic acid/alanine-rich protein GI:6707830 from
[Trypanosoma congolense]
Length = 413
Score = 27.5 bits (58), Expect = 4.1
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -2
Query: 68 HIIGDCANDYSDQTLACRLL 9
HI G+C+N+ S+QT CR +
Sbjct: 271 HIGGNCSNELSNQTGCCRAM 290
>At1g61900.1 68414.m06983 expressed protein contains similarity to
glutamic acid/alanine-rich protein GI:6707830 from
[Trypanosoma congolense]
Length = 433
Score = 27.5 bits (58), Expect = 4.1
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -2
Query: 68 HIIGDCANDYSDQTLACRLL 9
HI G+C+N+ S+QT CR +
Sbjct: 271 HIGGNCSNELSNQTGCCRAM 290
>At3g28415.1 68416.m03551 P-glycoprotein, putative contains
ATP-binding cassette; related to multi drug resistance
proteins
Length = 1221
Score = 26.6 bits (56), Expect = 7.1
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 165 FDQLALRAPTGRKTVLVQGRRNAREAV 245
FD L LR P+G+ LV G + + V
Sbjct: 356 FDDLCLRIPSGKSVALVGGSGSGKSTV 382
>At3g28390.1 68416.m03547 P-glycoprotein, putative similar to
P-glycoprotein homologue GI:2292907 from [Hordeum
vulgare subsp. vulgare]
Length = 1225
Score = 26.6 bits (56), Expect = 7.1
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 165 FDQLALRAPTGRKTVLVQGRRNAREAV 245
FD L LR P+G+ LV G + + V
Sbjct: 365 FDDLCLRVPSGKTVALVGGSGSGKSTV 391
>At1g57820.2 68414.m06561 zinc finger (C3HC4-type RING finger)
family protein low similarity to nuclear protein np95
[Mus musculus] GI:4220590; contains Pfam profiles
PF02182: YDG/SRA domain, PF00097: Zinc finger, C3HC4
type (RING finger), PF00628: PHD-finger
Length = 642
Score = 26.2 bits (55), Expect = 9.4
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 232 LVRQFVTSGRRLVHLVHILNHTCAPRDTS 318
LVR+ T GR L ++LN C P D S
Sbjct: 548 LVRERSTGGRTLRSRKNVLNCPCCPTDIS 576
>At1g57820.1 68414.m06560 zinc finger (C3HC4-type RING finger)
family protein low similarity to nuclear protein np95
[Mus musculus] GI:4220590; contains Pfam profiles
PF02182: YDG/SRA domain, PF00097: Zinc finger, C3HC4
type (RING finger), PF00628: PHD-finger
Length = 645
Score = 26.2 bits (55), Expect = 9.4
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 232 LVRQFVTSGRRLVHLVHILNHTCAPRDTS 318
LVR+ T GR L ++LN C P D S
Sbjct: 551 LVRERSTGGRTLRSRKNVLNCPCCPTDIS 579
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,566,079
Number of Sequences: 28952
Number of extensions: 164171
Number of successful extensions: 432
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 675111616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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