Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_B01
         (570 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ...    31   0.12 
SPAC688.06c |slx4||structure-specific endonuclease subunit |Schi...    27   1.5  
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo...    25   7.8  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    25   7.8  
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    25   7.8  

>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 932

 Score = 31.1 bits (67), Expect = 0.12
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +3

Query: 363 HSPARNQMQKLTKFQRLQPNDYVD*LKVYINPLSTYLAFPS 485
           H  A  + Q+L +  ++ P+D V+  KVY+N L T    PS
Sbjct: 561 HGDAMQEEQRLRQKSQITPDDEVELAKVYLNALETLENKPS 601


>SPAC688.06c |slx4||structure-specific endonuclease subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 419

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -1

Query: 435 NQHSHSAGDVETSSISASGFWQVSAPQRF*QHLRVLG 325
           N   HSA       IS+SGF+    PQ F + L  LG
Sbjct: 138 NTFEHSAYHSNREEISSSGFYYHRKPQLFEKSLEKLG 174


>SPAC3A11.02 |cps3|mug188|zinc finger protein
           Cps3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = -1

Query: 216 STHIAPPQAVGQHNCVSLHGVEGPHAGSHISMGSVGGHDPDAHFDT 79
           S+ +  P A    + +S+     P +GS     S   H P+AH ++
Sbjct: 218 SSTVRSPHAKRSLSSISVKSSTSPFSGSKFLSSSSYPHTPEAHLNS 263


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 9/52 (17%)
 Frame = -2

Query: 404 KLRQFLHLVSGR--------*VLRSGSDST*ESSDNQ-SHPYTCACKSTDRE 276
           +LR+ LHL SGR         VL+ GS       D Q SH Y C+ K  + +
Sbjct: 760 RLRKILHLFSGRNEDIASLQCVLQFGSSERIHLEDIQNSHRYLCSLKKNNSQ 811


>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -1

Query: 324 QSESPVHMCVQIHGP 280
           +S+ P+H+C+  H P
Sbjct: 345 ESDEPIHLCIMSHDP 359


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,414,303
Number of Sequences: 5004
Number of extensions: 50039
Number of successful extensions: 134
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)