Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_B01
(570 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0413 + 22681957-22682035,22682253-22682788 37 0.013
06_01_1133 + 9364842-9364850,9364929-9365048,9365157-9365476,936... 31 0.65
11_06_0007 - 19171122-19172036 31 0.85
04_04_1079 - 30663919-30665044,30665143-30665298,30665405-306655... 29 3.4
06_01_1013 - 7931756-7935109 28 4.6
06_01_0185 - 1437693-1437834,1437969-1438078,1438214-1438264,143... 28 6.0
05_01_0463 - 3666626-3666933,3667060-3667258,3667388-3667629,366... 28 6.0
07_01_0758 - 5833016-5833234,5833324-5833839,5833940-5833960,583... 27 8.0
03_02_0752 - 10922456-10922644,10922719-10922796,10922888-109230... 27 8.0
01_01_0148 - 1337494-1338057 27 8.0
>02_04_0413 + 22681957-22682035,22682253-22682788
Length = 204
Score = 36.7 bits (81), Expect = 0.013
Identities = 27/99 (27%), Positives = 33/99 (33%), Gaps = 1/99 (1%)
Frame = +2
Query: 89 CASGSCPPTLPIDMCEPACGPSTPCNETQLCCPTACGGAMCVDAMSQRHFVTLVKKGRCP 268
C G CPP+ + P C P CC C G C S + CP
Sbjct: 124 CGGGQCPPSPSCENHHPPCKPG--------CCCCGCSGGECPPPPSP------PCQHECP 169
Query: 269 EYPRGPWICTH-MCTGDSDCPRTLKCCQNRCGALTCQKP 382
P C H C+ C + C NRCG +P
Sbjct: 170 PTPP----CEHPPCSESGCCDKGCNSCCNRCGEYGQSRP 204
Score = 35.5 bits (78), Expect = 0.030
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = +2
Query: 77 CVSKCASGSCPPTLPIDMCEPACGPSTPCNETQLCCPTACGGAMC 211
C C+ G CPP P C+ C P+ PC E C + C C
Sbjct: 147 CCCGCSGGECPPP-PSPPCQHECPPTPPC-EHPPCSESGCCDKGC 189
>06_01_1133 +
9364842-9364850,9364929-9365048,9365157-9365476,
9366267-9366428,9367151-9367235,9367352-9367501,
9367588-9367635,9367705-9367773,9367897-9368600,
9369426-9369561,9369636-9369856,9370355-9370486,
9371316-9371406,9371878-9371925,9372004-9372132,
9372357-9372626
Length = 897
Score = 31.1 bits (67), Expect = 0.65
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Frame = +2
Query: 131 CEPACGPSTPCNETQLCCPTACG-GAMCVDAMSQRHFV-TLVKKGRCP 268
C+ ACG PC CC CG MC + H + + +CP
Sbjct: 653 CQSACGKQCPCLTNGTCCEKYCGCPKMCKNRFRGCHCAKSQCRSRQCP 700
>11_06_0007 - 19171122-19172036
Length = 304
Score = 30.7 bits (66), Expect = 0.85
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +2
Query: 95 SGSCPPTLPIDMCEPACGPSTPCNETQLCC 184
+ + PP P++ C + GP+T ++ Q CC
Sbjct: 200 AAAAPPCAPVEGCGESDGPNTADDDAQSCC 229
>04_04_1079 - 30663919-30665044,30665143-30665298,30665405-30665563,
30665640-30665770,30666230-30666315,30666607-30666673,
30666944-30667023,30667173-30667260,30667380-30667428,
30667516-30667608,30667725-30667808,30667986-30668044,
30668293-30668327,30668416-30668718,30669111-30669275,
30669701-30669780,30670932-30671003,30671143-30671234,
30671359-30671433,30671552-30671688,30671763-30671890,
30671942-30672033,30672473-30672808
Length = 1230
Score = 28.7 bits (61), Expect = 3.4
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -1
Query: 216 STHIAP-PQAVGQHNCVSLHGVEGPHAGSHISMGSVGGHDPDA 91
S+++AP PQA + S GV PHAGS V DP A
Sbjct: 1169 SSYVAPVPQASA--SSASSSGVPAPHAGSSTQSTGVPAPDPTA 1209
>06_01_1013 - 7931756-7935109
Length = 1117
Score = 28.3 bits (60), Expect = 4.6
Identities = 17/47 (36%), Positives = 18/47 (38%), Gaps = 7/47 (14%)
Frame = +2
Query: 77 CVSKCASGSCPPTLP--IDMCEPACG-----PSTPCNETQLCCPTAC 196
C C SG CPP L + ACG P PC CP C
Sbjct: 545 CQLLCHSGHCPPCLETIFNDLTCACGRTSIPPPLPCGTPTPSCPHQC 591
>06_01_0185 -
1437693-1437834,1437969-1438078,1438214-1438264,
1438877-1439122,1439244-1439315,1439614-1439648,
1439755-1439845,1440546-1440610,1440733-1440813,
1441020-1441137,1441535-1441627,1441865-1441997,
1442471-1442503,1443264-1443343,1443444-1443549,
1443621-1443795,1443884-1443980,1444819-1445251,
1445329-1445459,1446052-1446341,1446429-1447002
Length = 1051
Score = 27.9 bits (59), Expect = 6.0
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = -3
Query: 364 CSAAVLTALKS--PRTIRVTRTHVRANPRTA 278
C A V+ + S PRT V R VRANP A
Sbjct: 400 CDATVVALVSSSAPRTAEVLRAAVRANPSRA 430
>05_01_0463 -
3666626-3666933,3667060-3667258,3667388-3667629,
3667823-3669035
Length = 653
Score = 27.9 bits (59), Expect = 6.0
Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Frame = +2
Query: 113 TLPIDMCE--PACGPSTPCNETQL 178
TLP D+C+ CGP T CN L
Sbjct: 294 TLPKDLCDIYATCGPFTVCNSNAL 317
>07_01_0758 -
5833016-5833234,5833324-5833839,5833940-5833960,
5834062-5834232,5834318-5834449,5834534-5834743
Length = 422
Score = 27.5 bits (58), Expect = 8.0
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = -1
Query: 186 GQHNCVSLHGVEGPHAGSHISMGSVGGHDPDAHFDTQTKLDTI 58
G N + V GP G IS+GS+G H+ +AH + T +DT+
Sbjct: 257 GTENLHVKNMVCGP--GHGISIGSLGDHNSEAHVNNVT-VDTV 296
>03_02_0752 -
10922456-10922644,10922719-10922796,10922888-10923016,
10923105-10923152,10923243-10923333,10923517-10923648,
10923869-10924086,10925121-10925271,10925360-10926009,
10926715-10926786,10926938-10926985,10927105-10927242,
10927750-10927756,10928064-10928212
Length = 699
Score = 27.5 bits (58), Expect = 8.0
Identities = 9/23 (39%), Positives = 10/23 (43%)
Frame = +2
Query: 131 CEPACGPSTPCNETQLCCPTACG 199
C+ CG C E CC CG
Sbjct: 456 CQQMCGKDCACVENGTCCEKYCG 478
>01_01_0148 - 1337494-1338057
Length = 187
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +2
Query: 110 PTLPIDMCEPACGPSTPCNETQLCCPTACGGAMCVDAMSQR 232
P I +C + P C++ C ACG VD+ S R
Sbjct: 124 PCCDIAVCTKSLPPICHCSDEVESCAAACGQCEMVDSWSWR 164
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,588,998
Number of Sequences: 37544
Number of extensions: 376758
Number of successful extensions: 1061
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1058
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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