Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_A24
         (485 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.16 |sdh4|tim18|TIM22 inner membrane protein import com...    36   0.002
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom...    27   1.5  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    26   3.5  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   4.6  
SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos...    25   6.1  
SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase Cgs2|Schi...    25   6.1  
SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S...    25   6.1  

>SPBP23A10.16 |sdh4|tim18|TIM22 inner membrane protein import
           complex anchor subunit Tim18|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 186

 Score = 36.3 bits (80), Expect = 0.002
 Identities = 20/68 (29%), Positives = 36/68 (52%)
 Frame = +1

Query: 1   LVAILITAHSFWGLEAIAVDYVRASMFGPVIPKIAIGLVYLVSIATLAGLFYIISHDIGL 180
           L   LIT H+  G E+  +DY  A  F  + P +   ++   ++ TL G++   ++DIGL
Sbjct: 119 LACTLIT-HAHLGFESCVIDYFPARRFKKLSP-LMHWILRGCTVLTLIGVYEFNTNDIGL 176

Query: 181 ANTVRQFW 204
              +++ W
Sbjct: 177 TEGIKKLW 184


>SPBC354.13 |rga6||GTPase activating protein
           Rga6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 733

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 20/70 (28%), Positives = 30/70 (42%)
 Frame = +3

Query: 6   RDSHHRA*LLGSRGDCRRLRTGEYVRSRHTQNCDRLSLSRIHSNPRRSVLHH*PRHRSCE 185
           +DS  R+   GS     R  +  Y   R +    R SL+     P R+   H  +H +  
Sbjct: 239 QDSPKRSPSKGSWSSILRRPSLTYSPKRQSTGLHRRSLTNYFKFPHRNA--H--QHNAIA 294

Query: 186 HRPTVLGDPL 215
           H P+V G P+
Sbjct: 295 HNPSVFGKPI 304


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 272 CEPNYNHSTVIRIYDFWLS 216
           CEP YN S+++R  D + S
Sbjct: 453 CEPEYNRSSLVRASDVFTS 471


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +2

Query: 155 TSLATTSVLRTPSDSSGRSAPTTRSHKFV*PSNDCSLV 268
           TSL++++    P+ SS  +A T+ S   V PS+  S++
Sbjct: 12  TSLSSSASSSIPASSSSAAASTSLSSSSVIPSSSSSML 49


>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 187

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 111 AYRNFGYDGTEHTRPYV 61
           AYR+FG+   +H  PYV
Sbjct: 150 AYRHFGFGPHKHKAPYV 166


>SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase
           Cgs2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 346

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +1

Query: 64  VRASMFGPVIPKIAIGLVYLV 126
           + ++MFGP  P+  +GL Y++
Sbjct: 125 INSAMFGPQNPRTIVGLNYVI 145


>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 111 AYRNFGYDGTEHTRPYV 61
           AYR+FG+   +H  PYV
Sbjct: 150 AYRHFGFGPHKHKAPYV 166


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,980,406
Number of Sequences: 5004
Number of extensions: 37874
Number of successful extensions: 88
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)