Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_A24
         (485 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1209 - 24900538-24901128                                         29   2.0  
04_04_1552 - 34355544-34355613,34356099-34356282,34356829-343569...    27   6.0  
07_01_0551 - 4105721-4105774,4106090-4106159,4106880-4106945,410...    27   8.0  
06_01_0027 - 271199-271424,271628-272095,272721-273018,273133-27...    27   8.0  

>07_03_1209 - 24900538-24901128
          Length = 196

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = +3

Query: 117 LSRIHSNPRRSVLHH*PRHRSCEHRPTVLGDPLRQPEVINSY 242
           LS +H      VLHH PRH     R TV    L  P+  N +
Sbjct: 5   LSLLHLPRLSPVLHHHPRHLRLHGRTTVFQARLPSPQRTNQH 46


>04_04_1552 -
           34355544-34355613,34356099-34356282,34356829-34356922,
           34357006-34357124,34357623-34357689,34359185-34359265,
           34359267-34359413
          Length = 253

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = -2

Query: 478 RRYIGYRAQIL-TIRHIKPKYTGFNSRYIYVCTVHTLGVSRVITRSHTSAG 329
           R  +GYRA++   +RH  P   G+     YV      GVS  + + H S G
Sbjct: 22  RHRLGYRARLAPPVRH-TPVTDGWTLSMAYVPPAEATGVSGSVDQVHASFG 71


>07_01_0551 -
           4105721-4105774,4106090-4106159,4106880-4106945,
           4106985-4107479,4107491-4107672,4107728-4108222
          Length = 453

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +2

Query: 245 PSNDCSLVHTFFFCFCYYQ 301
           PS  CSL+H  F C CY Q
Sbjct: 372 PSRPCSLIHHIFTC-CYRQ 389


>06_01_0027 -
           271199-271424,271628-272095,272721-273018,273133-273343,
           273427-274124,274921-274969,276059-276112,276244-276275,
           276319-276484,276563-276628,276717-276812,276868-276957,
           277302-277398,277496-277575,277709-277753,278006-278134,
           278593-278722,278888-279222,279918-280053,280149-280328,
           280422-280679,280752-281137
          Length = 1409

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +2

Query: 137 PSPVCFTSLATTSVLRTPSDSSGRSAPTTR 226
           PS +   S    S+LRT S+SSGRS+   R
Sbjct: 828 PSIIYTKSQCGESILRTSSNSSGRSSSDAR 857


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,455,017
Number of Sequences: 37544
Number of extensions: 240929
Number of successful extensions: 526
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)