Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_A24
         (485 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3)                   32   0.22 
SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_8213| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.5  
SB_45559| Best HMM Match : FAD_Synth (HMM E-Value=1.8)                 28   4.7  
SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)              27   8.2  

>SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3)
          Length = 509

 Score = 32.3 bits (70), Expect = 0.22
 Identities = 29/69 (42%), Positives = 34/69 (49%), Gaps = 9/69 (13%)
 Frame = +3

Query: 12  SHHRA*LLGSRGDCRRLRTGEYVR-SRHTQ-NCDRLS----LSR-IHSNPRRSVLHH*P- 167
           +HHR         C R R   + R SRH   +C RLS    LSR +HSN  R  +HH P 
Sbjct: 241 NHHRP---SRHHHCHRPRLSNHHRPSRHLHCHCPRLSNHHRLSRHLHSNRLRLSIHHHPS 297

Query: 168 -RHRSCEHR 191
            RH  C HR
Sbjct: 298 SRHHHC-HR 305


>SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1870

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +3

Query: 3    CRDSHHRA*LLGSRGDCRRLRTGEYVRSRHTQNCDRLSLSRIHSNPR 143
            C+D+++       RG+CR  R   Y+R    ++C   + S I S PR
Sbjct: 1315 CKDNNYNCPSWARRGECR--RNPRYMRPNCRKSCGLCTTSPIPSTPR 1359


>SB_8213| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 244

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 34  WGLEAIAVDYVRASMFGPVIPKIAIGLVYLVSI 132
           WG +A+ +DY+   +     P  A+G++Y + I
Sbjct: 211 WGKKAVQIDYIVKFVLNYAFPLFAMGILYSIMI 243


>SB_45559| Best HMM Match : FAD_Synth (HMM E-Value=1.8)
          Length = 714

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -3

Query: 216 GADRPELSDGVRKTDVVANDVK-QTGEGCYGYE 121
           GA++ ELS  + +TDVV +DV    G   Y Y+
Sbjct: 408 GAEKQELSKAMSQTDVVTDDVDFLVGNTLYRYD 440


>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
          Length = 972

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +2

Query: 149 CFTSLATTSVLRTPSDSSGRSAPTTRSHKFV*PSNDCSLVHTFFFCFCYY 298
           C T+ AT +   T + ++  +A TT +     P     L + + +C+CYY
Sbjct: 433 CATATATATAATTAATATTTTATTTTTTTTTAPV----LRYCYCYCYCYY 478


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,080,204
Number of Sequences: 59808
Number of extensions: 305618
Number of successful extensions: 657
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1026164244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)