Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_A24
         (485 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g59010.1 68416.m06577 pectinesterase family protein contains ...    28   2.9  
At4g28490.1 68417.m04076 leucine-rich repeat transmembrane prote...    28   3.8  

>At3g59010.1 68416.m06577 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 529

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 170 TSVLRTP-SDSSGRSAPTTRSHKFV*PSNDCSLVHTFF 280
           T + R P SDSS R+ P+T S+K    S   SL H  F
Sbjct: 42  TKISRHPNSDSSSRTKPSTSSNKGFLSSVQLSLDHALF 79


>At4g28490.1 68417.m04076 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 999

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = +1

Query: 25  HSFWGLEAIAVDYVRASMFGPVIPKIAIGLVYLVSIATLAGLFY-IISHDIGLANTVRQF 201
           H FWGL  +++  +  + F   IPK  IG   L ++      F   I ++IG  N + + 
Sbjct: 421 HGFWGLPRLSLLELSDNSFTGSIPKTIIGAKNLSNLRISKNRFSGSIPNEIGSLNGIIEI 480

Query: 202 WAIRSD 219
               +D
Sbjct: 481 SGAEND 486


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,199,564
Number of Sequences: 28952
Number of extensions: 196557
Number of successful extensions: 430
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 838967680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)