Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_A23
(394 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_O44200 Cluster: DNA, clone TREST1,; n=4; Bombyx mori|Re... 46 2e-04
UniRef50_O01418 Cluster: Gag protein; n=2; Obtectomera|Rep: Gag ... 45 5e-04
UniRef50_Q9N9Z2 Cluster: Gag-like protein; n=1; Drosophila melan... 44 0.001
UniRef50_Q8MY38 Cluster: Gag-like protein; n=7; Papilio xuthus|R... 39 0.039
UniRef50_Q4JG17 Cluster: Vasa-like protein; n=1; Litopenaeus van... 39 0.039
UniRef50_Q966L9 Cluster: ATP-dependent RNA helicase glh-2; n=4; ... 38 0.069
UniRef50_UPI00015B43D2 Cluster: PREDICTED: similar to gag-like p... 38 0.091
UniRef50_Q4Q1R1 Cluster: Poly-zinc finger protein 2, putative; n... 38 0.091
UniRef50_Q6CH34 Cluster: Similarity; n=1; Yarrowia lipolytica|Re... 38 0.091
UniRef50_Q9GNP1 Cluster: Vasa homolog; n=18; Eumetazoa|Rep: Vasa... 37 0.16
UniRef50_Q868T1 Cluster: Gag-like protein; n=2; gambiae species ... 36 0.21
UniRef50_A3AZ85 Cluster: Putative uncharacterized protein; n=2; ... 36 0.28
UniRef50_A2XZK7 Cluster: Putative uncharacterized protein; n=1; ... 36 0.28
UniRef50_Q7JQ89 Cluster: CnjB protein; n=3; Tetrahymena thermoph... 36 0.37
UniRef50_Q868R5 Cluster: Gag-like protein; n=1; Anopheles gambia... 35 0.48
UniRef50_Q5KNX0 Cluster: Putative uncharacterized protein; n=1; ... 35 0.48
UniRef50_UPI0000DD7FC7 Cluster: PREDICTED: hypothetical protein;... 35 0.64
UniRef50_Q868R7 Cluster: Gag-like protein; n=1; Anopheles gambia... 35 0.64
UniRef50_Q868Q7 Cluster: Gag-like protein; n=1; Anopheles gambia... 34 0.85
UniRef50_Q8MSM1 Cluster: AT22983p; n=1; Drosophila melanogaster|... 34 1.1
UniRef50_UPI0000DB6C7F Cluster: PREDICTED: similar to chromosome... 33 1.5
UniRef50_Q4Q1A0 Cluster: Putative uncharacterized protein; n=3; ... 33 1.5
UniRef50_UPI0000EB362D Cluster: UPI0000EB362D related cluster; n... 33 2.0
UniRef50_UPI000023D68A Cluster: hypothetical protein FG04118.1; ... 33 2.6
UniRef50_UPI0000EB3858 Cluster: UPI0000EB3858 related cluster; n... 33 2.6
UniRef50_A1VUD9 Cluster: Putative uncharacterized protein precur... 33 2.6
UniRef50_A7SZ51 Cluster: Predicted protein; n=1; Nematostella ve... 33 2.6
UniRef50_UPI00015B440E Cluster: PREDICTED: similar to AT07338p; ... 32 3.4
UniRef50_Q6QGV3 Cluster: Gag protein; n=1; Simian immunodeficien... 32 3.4
UniRef50_Q5FUD2 Cluster: Putative uncharacterized protein; n=1; ... 32 3.4
UniRef50_Q5KMN5 Cluster: mRNA 3'-end-processing protein YTH1; n=... 32 3.4
UniRef50_Q04832 Cluster: DNA-binding protein HEXBP; n=8; Eukaryo... 32 3.4
UniRef50_A7NFT6 Cluster: RNA binding S1 domain protein; n=2; Ros... 32 4.5
UniRef50_Q9VZW1 Cluster: CG1893-PA; n=3; Sophophora|Rep: CG1893-... 32 4.5
UniRef50_A1DEW0 Cluster: Predicted protein; n=3; Trichocomaceae|... 32 4.5
UniRef50_UPI0000EBEEAF Cluster: PREDICTED: hypothetical protein,... 31 6.0
UniRef50_UPI000054533D Cluster: PREDICTED: hypothetical protein;... 31 6.0
UniRef50_Q31IH2 Cluster: Resistance-Nodulation-Cell Division (RN... 31 6.0
UniRef50_A0LCQ0 Cluster: Putative uncharacterized protein precur... 31 6.0
UniRef50_Q94JZ6 Cluster: Protein kinase-like protein; n=12; Magn... 31 6.0
UniRef50_Q868S9 Cluster: Gag-like protein; n=1; Anopheles gambia... 31 6.0
UniRef50_Q868R1 Cluster: Gag-like protein; n=1; Anopheles gambia... 31 6.0
UniRef50_Q55AJ7 Cluster: Putative uncharacterized protein; n=2; ... 31 6.0
UniRef50_Q1JTH7 Cluster: Putative uncharacterized protein precur... 31 6.0
UniRef50_Q59R87 Cluster: Potential retrotransposon gag-like prot... 31 6.0
UniRef50_A7F652 Cluster: Predicted protein; n=1; Sclerotinia scl... 31 6.0
UniRef50_Q8AII1 Cluster: Gag-Pol polyprotein (Pr160Gag-Pol) [Con... 31 6.0
UniRef50_A4J2D3 Cluster: 4Fe-4S ferredoxin, iron-sulfur binding ... 28 7.2
UniRef50_UPI00015B4669 Cluster: PREDICTED: similar to gag-like p... 31 7.9
UniRef50_UPI00006A0F64 Cluster: UPI00006A0F64 related cluster; n... 31 7.9
UniRef50_Q21KX4 Cluster: Putative retaining b-glycosidase; n=1; ... 31 7.9
UniRef50_A6GF06 Cluster: Putative uncharacterized protein; n=1; ... 31 7.9
UniRef50_A0U668 Cluster: Putative uncharacterized protein precur... 31 7.9
UniRef50_Q41805 Cluster: Extensin-like protein precursor; n=15; ... 31 7.9
UniRef50_Q5TW49 Cluster: ENSANGP00000028013; n=1; Anopheles gamb... 31 7.9
UniRef50_Q9IDV9 Cluster: Gag-Pol polyprotein (Pr160Gag-Pol) [Con... 31 7.9
>UniRef50_O44200 Cluster: DNA, clone TREST1,; n=4; Bombyx mori|Rep:
DNA, clone TREST1, - Bombyx mori (Silk moth)
Length = 323
Score = 46.4 bits (105), Expect = 2e-04
Identities = 18/42 (42%), Positives = 23/42 (54%)
Frame = -1
Query: 364 SKPLQYFRCLGLGHNSPVCPSGSERGSPSFRCGEQGYKVVHC 239
S+P + RC G GH CPS +R FRCG+ G+K C
Sbjct: 203 SRPWRCLRCFGTGHGLAKCPSTVDRSDLCFRCGQPGHKAASC 244
>UniRef50_O01418 Cluster: Gag protein; n=2; Obtectomera|Rep: Gag
protein - Bombyx mori (Silk moth)
Length = 712
Score = 45.2 bits (102), Expect = 5e-04
Identities = 18/42 (42%), Positives = 25/42 (59%)
Frame = -1
Query: 364 SKPLQYFRCLGLGHNSPVCPSGSERGSPSFRCGEQGYKVVHC 239
++ LQ +RC LGH S CPS +R +RCG+ G+K C
Sbjct: 613 ARRLQCYRCHALGHVSARCPSSVDRSGECYRCGQTGHKSAGC 654
>UniRef50_Q9N9Z2 Cluster: Gag-like protein; n=1; Drosophila
melanogaster|Rep: Gag-like protein - Drosophila
melanogaster (Fruit fly)
Length = 488
Score = 43.6 bits (98), Expect = 0.001
Identities = 18/41 (43%), Positives = 24/41 (58%)
Frame = -1
Query: 361 KPLQYFRCLGLGHNSPVCPSGSERGSPSFRCGEQGYKVVHC 239
+P++ FRCL GH +P C S +R RCGE G+K C
Sbjct: 405 RPIRCFRCLEFGHRAPYCKS-VDRSDCCLRCGEHGHKAKGC 444
>UniRef50_Q8MY38 Cluster: Gag-like protein; n=7; Papilio xuthus|Rep:
Gag-like protein - Papilio xuthus
Length = 698
Score = 38.7 bits (86), Expect = 0.039
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = -1
Query: 361 KPLQYFRCLGLGHNSPVCPSGSERGSPSFRCGEQGYKVVHC 239
+P++ +RCL GH C + +R FRCG +G+K C
Sbjct: 587 RPMRCYRCLQKGHVRAQCNAEEDRSKLCFRCGVEGHKFKGC 627
>UniRef50_Q4JG17 Cluster: Vasa-like protein; n=1; Litopenaeus
vannamei|Rep: Vasa-like protein - Penaeus vannamei
(Penoeid shrimp) (European white shrimp)
Length = 703
Score = 38.7 bits (86), Expect = 0.039
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -1
Query: 346 FRCLGLGHNSPVCPSGSERGSPSFRCGEQGYKVVHCKG*G 227
F+C GH S CPSG R F+CG++G+ C G
Sbjct: 167 FKCGEEGHMSRDCPSGGGRNKGCFKCGQEGHNARDCPNPG 206
>UniRef50_Q966L9 Cluster: ATP-dependent RNA helicase glh-2; n=4;
Caenorhabditis|Rep: ATP-dependent RNA helicase glh-2 -
Caenorhabditis elegans
Length = 974
Score = 37.9 bits (84), Expect = 0.069
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = -1
Query: 358 PLQYFRCLGLGHNSPVCPSGSERGSPSFRCGEQGYKVVHC 239
P++ F C G GH S CP RG F CGEQG++ C
Sbjct: 452 PMKCFNCKGEGHRSAECPE-PPRG--CFNCGEQGHRSNEC 488
>UniRef50_UPI00015B43D2 Cluster: PREDICTED: similar to gag-like
protein, partial; n=1; Nasonia vitripennis|Rep:
PREDICTED: similar to gag-like protein, partial -
Nasonia vitripennis
Length = 456
Score = 37.5 bits (83), Expect = 0.091
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -1
Query: 364 SKPLQYFRCLGLGHNSPVCPSGSERGSPSFRCGEQGYKVVHC 239
+ P + +RCLG GH C G +R + ++CG G+K C
Sbjct: 350 ANPTRCYRCLGYGHVKARC-KGPDRNANCWKCGASGHKAALC 390
>UniRef50_Q4Q1R1 Cluster: Poly-zinc finger protein 2, putative; n=3;
Leishmania|Rep: Poly-zinc finger protein 2, putative -
Leishmania major
Length = 135
Score = 37.5 bits (83), Expect = 0.091
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = -1
Query: 346 FRCLGLGHNSPVCPSGSERGSPSFRCGEQGYKVVHC 239
+RC G+GH S C S ++ +P FRCG+ G+ C
Sbjct: 4 YRCGGVGHQSRECTSAAD-SAPCFRCGKPGHVAREC 38
>UniRef50_Q6CH34 Cluster: Similarity; n=1; Yarrowia lipolytica|Rep:
Similarity - Yarrowia lipolytica (Candida lipolytica)
Length = 586
Score = 37.5 bits (83), Expect = 0.091
Identities = 20/53 (37%), Positives = 28/53 (52%)
Frame = +3
Query: 24 QAPTRGDGHPGQTRPSLRQLSHPFPWFGNTTVSRFRKNLAPSHSCPNRPKWRP 182
Q P+R G +RP+ R SH FPW + + RFR + +S RP+ RP
Sbjct: 509 QIPSRY-GSVEASRPAKRLRSHAFPWDSDDLIDRFRPDGPKDNSPEERPEERP 560
>UniRef50_Q9GNP1 Cluster: Vasa homolog; n=18; Eumetazoa|Rep: Vasa
homolog - Ciona savignyi (Pacific transparent sea
squirt)
Length = 770
Score = 36.7 bits (81), Expect = 0.16
Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = -1
Query: 370 G*SKPLQYFRCLGLGHNSPVCPSGS--ERGSPSFRCGEQGYKVVHC-KG*G 227
G S+ F+C GH S CP G RG F+CGE+G+ C KG G
Sbjct: 101 GSSRSKGCFKCGEEGHMSRECPQGGGGSRGKGCFKCGEEGHMSRECPKGGG 151
Score = 36.7 bits (81), Expect = 0.16
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -1
Query: 370 G*SKPLQYFRCLGLGHNSPVCPSGSE--RGSPSFRCGEQGYKVVHC 239
G S+ F+C GH S CP G RGS F+CGE+G+ C
Sbjct: 183 GRSRSKGCFKCGEEGHMSRECPQGGGGGRGSGCFKCGEEGHMSREC 228
Score = 36.3 bits (80), Expect = 0.21
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = -1
Query: 346 FRCLGLGHNSPVCPSGSE--RGSPSFRCGEQGYKVVHC 239
F+C GH S CP G RGS F+CGE+G+ C
Sbjct: 216 FKCGEEGHMSRECPQGGGGGRGSGCFKCGEEGHMSREC 253
Score = 31.9 bits (69), Expect = 4.5
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Frame = -1
Query: 385 CAA*SG*SKPLQYFRCLGLGHNSPVCPSGSERGSPS----FRCGEQGYKVVHC 239
C G S+ F+C GH S CP G G F+CGE+G+ C
Sbjct: 121 CPQGGGGSRGKGCFKCGEEGHMSRECPKGGGGGGGGGRGCFKCGEEGHMSREC 173
>UniRef50_Q868T1 Cluster: Gag-like protein; n=2; gambiae species
complex|Rep: Gag-like protein - Anopheles gambiae
(African malaria mosquito)
Length = 541
Score = 36.3 bits (80), Expect = 0.21
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -1
Query: 346 FRCLGLGHNSPVCPSGSERGSPSFRCGEQGYKVVHC 239
+RCL GH + C S ++R RCG +G+K C
Sbjct: 478 YRCLERGHLAHACRSSTDRQQLCIRCGSEGHKARDC 513
>UniRef50_A3AZ85 Cluster: Putative uncharacterized protein; n=2; Oryza
sativa (japonica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. japonica
(Rice)
Length = 1016
Score = 35.9 bits (79), Expect = 0.28
Identities = 22/71 (30%), Positives = 31/71 (43%)
Frame = -1
Query: 355 LQYFRCLGLGHNSPVCPSGSERGSPSFRCGEQGYKVVHCKG*GRT*HSSQHG*YASYAGR 176
L+ F+C GH S CP S GS F+C + G+ C G +QH Y +
Sbjct: 947 LECFKCKQPGHFSRDCPVQSTGGSECFKCKQPGHFARDCPGQST---GAQHQTYGNNVAA 1003
Query: 175 HLGLLGQEWLG 143
G Q ++G
Sbjct: 1004 SRGYNRQSFVG 1014
>UniRef50_A2XZK7 Cluster: Putative uncharacterized protein; n=1; Oryza
sativa (indica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. indica
(Rice)
Length = 988
Score = 35.9 bits (79), Expect = 0.28
Identities = 22/71 (30%), Positives = 31/71 (43%)
Frame = -1
Query: 355 LQYFRCLGLGHNSPVCPSGSERGSPSFRCGEQGYKVVHCKG*GRT*HSSQHG*YASYAGR 176
L+ F+C GH S CP S GS F+C + G+ C G +QH Y +
Sbjct: 919 LECFKCKQPGHFSRDCPVQSTGGSECFKCKQPGHFARDCPGQST---GAQHQTYGNNVAA 975
Query: 175 HLGLLGQEWLG 143
G Q ++G
Sbjct: 976 SRGYNRQSFVG 986
>UniRef50_Q7JQ89 Cluster: CnjB protein; n=3; Tetrahymena
thermophila|Rep: CnjB protein - Tetrahymena thermophila
Length = 1748
Score = 35.5 bits (78), Expect = 0.37
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -1
Query: 346 FRCLGLGHNSPVCPSGSERGSPSFRCGEQGYKVVHC 239
F+C GH S CP+ ++ S F+CGE+G+ C
Sbjct: 1479 FKCNQEGHMSKDCPNQQQKKSGCFKCGEEGHFSKDC 1514
Score = 35.5 bits (78), Expect = 0.37
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -1
Query: 346 FRCLGLGHNSPVCPSGSERGSPSFRCGEQGYKVVHC 239
F C GH S CP+ S++ F CGE+G++ C
Sbjct: 1580 FNCNQEGHMSKDCPNPSQKKKGCFNCGEEGHQSREC 1615
>UniRef50_Q868R5 Cluster: Gag-like protein; n=1; Anopheles
gambiae|Rep: Gag-like protein - Anopheles gambiae
(African malaria mosquito)
Length = 527
Score = 35.1 bits (77), Expect = 0.48
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -1
Query: 346 FRCLGLGHNSPVCPSGSERGSPSFRCGEQGYKVVHC 239
FRCL GH + C +G +R RCG+Q +K C
Sbjct: 467 FRCLERGHIAATC-TGEDRSKRCLRCGDQTHKASGC 501
>UniRef50_Q5KNX0 Cluster: Putative uncharacterized protein; n=1;
Filobasidiella neoformans|Rep: Putative uncharacterized
protein - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 1641
Score = 35.1 bits (77), Expect = 0.48
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = -1
Query: 358 PLQYFRCLGLGHNSPVCPSGSERGSPSFRCGEQGYKVVHCKG 233
P FRC GH + CP+ G F+CG+ G+ C G
Sbjct: 678 PNDCFRCQQPGHMARECPNTFGGGDACFKCGQPGHFARECPG 719
>UniRef50_UPI0000DD7FC7 Cluster: PREDICTED: hypothetical protein;
n=1; Homo sapiens|Rep: PREDICTED: hypothetical protein -
Homo sapiens
Length = 534
Score = 34.7 bits (76), Expect = 0.64
Identities = 20/47 (42%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = +1
Query: 13 PVPSRPPPEEMVTPARPGH--LLDSFPTPSLGLGIRQCPDSEKTLHP 147
P PS P + P PGH L PTP LG R CP+ T HP
Sbjct: 320 PNPSSHPQDPGPDPGHPGHALALPRTPTPQLGSRSRPCPE-HLTPHP 365
>UniRef50_Q868R7 Cluster: Gag-like protein; n=1; Anopheles
gambiae|Rep: Gag-like protein - Anopheles gambiae
(African malaria mosquito)
Length = 400
Score = 34.7 bits (76), Expect = 0.64
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -1
Query: 346 FRCLGLGHNSPVCPSGSERGSPSFRCGEQGYKVVHC 239
F+C LGH C +G +R +CG++G+K+ C
Sbjct: 331 FKCWKLGHKGFEC-TGQDRSKLCIKCGQEGHKIREC 365
>UniRef50_Q868Q7 Cluster: Gag-like protein; n=1; Anopheles
gambiae|Rep: Gag-like protein - Anopheles gambiae
(African malaria mosquito)
Length = 298
Score = 34.3 bits (75), Expect = 0.85
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = -1
Query: 346 FRCLGLGHNSPVCPSGSERGSPSFRCGEQGYKVVHC 239
FRCL GH C G+ R S RCG +K V+C
Sbjct: 237 FRCLERGHMVREC-QGTNRSSLCIRCGAANHKAVNC 271
>UniRef50_Q8MSM1 Cluster: AT22983p; n=1; Drosophila
melanogaster|Rep: AT22983p - Drosophila melanogaster
(Fruit fly)
Length = 186
Score = 33.9 bits (74), Expect = 1.1
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -1
Query: 346 FRCLGLGHNSPVCPSGSERGSPSFRCGEQGYK 251
FRCL GH + C S +R FRCG G+K
Sbjct: 101 FRCLEEGHIAAHCRSTVDRSQCCFRCGTAGHK 132
>UniRef50_UPI0000DB6C7F Cluster: PREDICTED: similar to chromosome
condensation 1; n=2; Endopterygota|Rep: PREDICTED:
similar to chromosome condensation 1 - Apis mellifera
Length = 439
Score = 33.5 bits (73), Expect = 1.5
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -2
Query: 309 VLRDQNGEAQVLGVGNRATRSYIVRGEAERNTHHNMGSML 190
VL D+NG G G + + A RNT H MG +L
Sbjct: 200 VLLDKNGHVYTCGCGEQGQLGRVAARTASRNTRHGMGPLL 239
>UniRef50_Q4Q1A0 Cluster: Putative uncharacterized protein; n=3;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major
Length = 566
Score = 33.5 bits (73), Expect = 1.5
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -1
Query: 364 SKPLQYFRCLGLGHNSPVCPSGSERGSPSFRCGEQGYKVVHC 239
SKP F C GH S CP S +G ++C E G++ +C
Sbjct: 161 SKP-HCFHCSHSGHRSSECPMRS-KGRVCYQCNEPGHEAANC 200
>UniRef50_UPI0000EB362D Cluster: UPI0000EB362D related cluster; n=1;
Canis lupus familiaris|Rep: UPI0000EB362D UniRef100
entry - Canis familiaris
Length = 607
Score = 33.1 bits (72), Expect = 2.0
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +1
Query: 13 PVPSRPP-PEEMVTPARPGHLLDSFPTPSLGLGIRQCPDSEKTLHP 147
P P RPP P E ARP H S P+P + P + +LHP
Sbjct: 433 PQPPRPPNPPEGAVAARPFHPPPSPPSPGQPPSLPAMPHARPSLHP 478
>UniRef50_UPI000023D68A Cluster: hypothetical protein FG04118.1; n=1;
Gibberella zeae PH-1|Rep: hypothetical protein FG04118.1
- Gibberella zeae PH-1
Length = 1014
Score = 32.7 bits (71), Expect = 2.6
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +1
Query: 1 YLSHPVPSRPPPEEMVTPARPGHLLDSFPTPSLGLGIRQCPDSEKT 138
++SH +RPP E+ T ++ G P+P LG G + DS T
Sbjct: 890 HVSHVDGTRPPALEIDTSSQEGRSSSEVPSPELGPGDKTSKDSSPT 935
>UniRef50_UPI0000EB3858 Cluster: UPI0000EB3858 related cluster; n=1;
Canis lupus familiaris|Rep: UPI0000EB3858 UniRef100
entry - Canis familiaris
Length = 690
Score = 32.7 bits (71), Expect = 2.6
Identities = 36/109 (33%), Positives = 46/109 (42%), Gaps = 15/109 (13%)
Frame = +3
Query: 24 QAPTRGDGH-----PGQTRPSLRQLSH------PFPWFGNTTVSRFRKNLAPSHSCPNRP 170
Q P+ G G PGQ P LR +S P PW + + ++ R S SCP P
Sbjct: 373 QPPSPGGGRVSPTRPGQGPPLLRAVSPNARETPPGPWEASPSRAQLRCGQGSSRSCP--P 430
Query: 171 KWRPA*LAYYPCCDECYV----LPHPLQCTTL*PCSPHLKLGLPRSDPE 305
RPA L P ++ V P PL P +P LP S+PE
Sbjct: 431 AGRPARLGPGPESNKGLVRTGAFPSPLPAPQPGPAAP--GGALPYSEPE 477
>UniRef50_A1VUD9 Cluster: Putative uncharacterized protein
precursor; n=1; Polaromonas naphthalenivorans CJ2|Rep:
Putative uncharacterized protein precursor - Polaromonas
naphthalenivorans (strain CJ2)
Length = 154
Score = 32.7 bits (71), Expect = 2.6
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = +1
Query: 16 VPSRPPPEEMVTPARPGHLLDSFPTPSLGLGIR 114
VP+RPPP +V P RP H P P G G R
Sbjct: 81 VPNRPPPPVVVVPNRPFHPGAHQPRPGRGNGDR 113
>UniRef50_A7SZ51 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 323
Score = 32.7 bits (71), Expect = 2.6
Identities = 33/114 (28%), Positives = 43/114 (37%), Gaps = 3/114 (2%)
Frame = +1
Query: 7 SHPVPSRPPP-EEMVTPARPGHLLDSFPTPSLGLGIRQCPDSEKTLHPAILALIGLNG-D 180
SHP+PS P M + A P H + P PS P HP I +
Sbjct: 3 SHPMPSHAIPCHAMPSQAMPSHAIPCHPMPSHATPCHPMPSHAIPCHPMPSHSIPCHPMP 62
Query: 181 LHS*HTTHVVMSVTFC-LTPYNVRPCSPVPHT*NLGFPVLIPKDRLGYCDPGPN 339
HS + + C P N PC P+P +L P IP + C P P+
Sbjct: 63 SHSIPSHAIPCHAMPCHPMPCNAIPCHPMPC--HLMPPHAIPCHAIS-CHPMPS 113
>UniRef50_UPI00015B440E Cluster: PREDICTED: similar to AT07338p;
n=1; Nasonia vitripennis|Rep: PREDICTED: similar to
AT07338p - Nasonia vitripennis
Length = 1756
Score = 32.3 bits (70), Expect = 3.4
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -1
Query: 355 LQYFRCLGLGHNSPVCPSGSERGSPSFRCGEQGYKVVHC 239
++ + C GH SPVCP+ S R CG+ G +C
Sbjct: 523 VECYACHQKGHKSPVCPNRSRRQIQCQVCGQFGTTFQNC 561
>UniRef50_Q6QGV3 Cluster: Gag protein; n=1; Simian immunodeficiency
virus|Rep: Gag protein - Simian immunodeficiency virus
(isolate CPZ GAB1) (SIV-cpz) (Chimpanzeeimmunodeficiency
virus)
Length = 140
Score = 32.3 bits (70), Expect = 3.4
Identities = 13/45 (28%), Positives = 27/45 (60%)
Frame = -1
Query: 373 SG*SKPLQYFRCLGLGHNSPVCPSGSERGSPSFRCGEQGYKVVHC 239
+G P++ F C +GH + C + ++G ++CG+QG+++ C
Sbjct: 34 AGAKGPVKCFNCGKIGHTARNCRAPRKQG--CWKCGQQGHQMKEC 76
>UniRef50_Q5FUD2 Cluster: Putative uncharacterized protein; n=1;
Gluconobacter oxydans|Rep: Putative uncharacterized
protein - Gluconobacter oxydans (Gluconobacter
suboxydans)
Length = 158
Score = 32.3 bits (70), Expect = 3.4
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -2
Query: 63 WSGRGDHLLGWGPGWNGMG 7
W G G + GWG GW GMG
Sbjct: 94 WDGWGGGMGGWGGGWGGMG 112
>UniRef50_Q5KMN5 Cluster: mRNA 3'-end-processing protein YTH1; n=1;
Filobasidiella neoformans|Rep: mRNA 3'-end-processing
protein YTH1 - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 332
Score = 32.3 bits (70), Expect = 3.4
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 4 LSHPVPSRPPPEEMVTPARPGHLLDSFPTPSLGLG 108
L+HP P+RPP E + P P + P P L G
Sbjct: 194 LAHPSPNRPPAESYINPIPPDPEAFNGPPPQLPAG 228
>UniRef50_Q04832 Cluster: DNA-binding protein HEXBP; n=8;
Eukaryota|Rep: DNA-binding protein HEXBP - Leishmania
major
Length = 271
Score = 32.3 bits (70), Expect = 3.4
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = -1
Query: 373 SG*SKPLQYFRCLGLGHNSPVCPS----GSERGSPSFRCGEQGYKVVHC 239
SG + + FRC GH S CP+ G+ +G ++CG++G+ C
Sbjct: 64 SGAAGAMTCFRCGEAGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDC 112
Score = 31.5 bits (68), Expect = 6.0
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Frame = -1
Query: 328 GHNSPVCPS----GSERGSPSFRCGEQGYKVVHCKG*GRT 221
GH + CP G ER + FRCGE+G+ C R+
Sbjct: 25 GHYARECPEADSKGDERSTTCFRCGEEGHMSRECPNEARS 64
Score = 31.1 bits (67), Expect = 7.9
Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Frame = -1
Query: 346 FRCLGLGHNSPVCP----SGSERGSPSFRCGEQGYKVVHC 239
FRC GH S CP SG+ FRCGE G+ C
Sbjct: 46 FRCGEEGHMSRECPNEARSGAAGAMTCFRCGEAGHMSRDC 85
>UniRef50_A7NFT6 Cluster: RNA binding S1 domain protein; n=2;
Roseiflexus|Rep: RNA binding S1 domain protein -
Roseiflexus castenholzii DSM 13941
Length = 262
Score = 31.9 bits (69), Expect = 4.5
Identities = 22/62 (35%), Positives = 27/62 (43%)
Frame = +1
Query: 4 LSHPVPSRPPPEEMVTPARPGHLLDSFPTPSLGLGIRQCPDSEKTLHPAILALIGLNGDL 183
L P PSRPP PARP L + P P + +T PA A I L G++
Sbjct: 128 LPSPAPSRPPSATQSAPARPSPSL-AQPAARPPSAPSPAPPAAQTAPPAPPASIPLPGEV 186
Query: 184 HS 189
S
Sbjct: 187 FS 188
>UniRef50_Q9VZW1 Cluster: CG1893-PA; n=3; Sophophora|Rep: CG1893-PA
- Drosophila melanogaster (Fruit fly)
Length = 263
Score = 31.9 bits (69), Expect = 4.5
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -3
Query: 185 CRSPFRPIRARMAGCKVFSESGHCRIPKPREGVGKLSKRWPGL 57
C I + CK FS++ + E +GK+SK+W GL
Sbjct: 180 CGDTVLQIEGPVCPCKCFSDTNFKVLSANNEEIGKISKQWSGL 222
>UniRef50_A1DEW0 Cluster: Predicted protein; n=3;
Trichocomaceae|Rep: Predicted protein - Neosartorya
fischeri (strain ATCC 1020 / DSM 3700 / NRRL
181)(Aspergillus fischerianus (strain ATCC 1020 / DSM
3700 / NRRL 181))
Length = 1308
Score = 31.9 bits (69), Expect = 4.5
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +1
Query: 4 LSHPVPSRPPPEEMVTPAR-PGHLLDSFPTPSL 99
+ HP+P RPP E P+R PG + PS+
Sbjct: 551 IQHPLPDRPPDPESTAPSRIPGLFMTELSEPSV 583
>UniRef50_UPI0000EBEEAF Cluster: PREDICTED: hypothetical protein,
partial; n=1; Bos taurus|Rep: PREDICTED: hypothetical
protein, partial - Bos taurus
Length = 612
Score = 31.5 bits (68), Expect = 6.0
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = +1
Query: 16 VPSRPPPEEMVTPARPGHLLDSFPTPSLGLGIR 114
+PSRP P E P PG DS +PS G R
Sbjct: 169 IPSRPGPAEARLPFSPGDSRDSLRSPSSAKGAR 201
>UniRef50_UPI000054533D Cluster: PREDICTED: hypothetical protein;
n=3; Danio rerio|Rep: PREDICTED: hypothetical protein -
Danio rerio
Length = 993
Score = 31.5 bits (68), Expect = 6.0
Identities = 19/46 (41%), Positives = 25/46 (54%)
Frame = +1
Query: 16 VPSRPPPEEMVTPARPGHLLDSFPTPSLGLGIRQCPDSEKTLHPAI 153
VP+ P PE+ TPA H++ S P PS+ Q P S KT P +
Sbjct: 73 VPAEPTPEKQPTPA-SSHII-SKPVPSM-----QAPTSSKTTQPIL 111
>UniRef50_Q31IH2 Cluster: Resistance-Nodulation-Cell Division (RND)
superfamily transporter; n=1; Thiomicrospira crunogena
XCL-2|Rep: Resistance-Nodulation-Cell Division (RND)
superfamily transporter - Thiomicrospira crunogena
(strain XCL-2)
Length = 1105
Score = 31.5 bits (68), Expect = 6.0
Identities = 24/103 (23%), Positives = 45/103 (43%)
Frame = +1
Query: 13 PVPSRPPPEEMVTPARPGHLLDSFPTPSLGLGIRQCPDSEKTLHPAILALIGLNGDLHS* 192
P R PE++++ DS P + I++ P ++ + ++ + G+L
Sbjct: 820 PRSERTVPEQLLSLNVQSRAGDSVPISAFAK-IKEVPQAKPIIGRDQHQMVMVGGELLRS 878
Query: 193 HTTHVVMSVTFCLTPYNVRPCSPVPHT*NLGFPVLIPKDRLGY 321
+ V+S+ L + + HT NLGF P+D +GY
Sbjct: 879 SPVYAVLSLDGMLDGVKLPESNVTFHTANLGFVEAQPEDVMGY 921
>UniRef50_A0LCQ0 Cluster: Putative uncharacterized protein
precursor; n=1; Magnetococcus sp. MC-1|Rep: Putative
uncharacterized protein precursor - Magnetococcus sp.
(strain MC-1)
Length = 278
Score = 31.5 bits (68), Expect = 6.0
Identities = 19/57 (33%), Positives = 24/57 (42%)
Frame = +3
Query: 9 PSRSIQAPTRGDGHPGQTRPSLRQLSHPFPWFGNTTVSRFRKNLAPSHSCPNRPKWR 179
PSR P+RG G P P R+ P+ +NLAP RP+WR
Sbjct: 109 PSRGYGEPSRGYGEPPYAEPRSRR-REPYSQRDGYPQRGAVENLAPRLPQKKRPQWR 164
>UniRef50_Q94JZ6 Cluster: Protein kinase-like protein; n=12;
Magnoliophyta|Rep: Protein kinase-like protein -
Arabidopsis thaliana (Mouse-ear cress)
Length = 652
Score = 31.5 bits (68), Expect = 6.0
Identities = 16/42 (38%), Positives = 18/42 (42%)
Frame = +1
Query: 13 PVPSRPPPEEMVTPARPGHLLDSFPTPSLGLGIRQCPDSEKT 138
P PS P P + P+ PG L P PS I P S T
Sbjct: 54 PPPSSPLPPSLPPPSPPGSLTPPIPQPSPSAPITPSPPSPTT 95
>UniRef50_Q868S9 Cluster: Gag-like protein; n=1; Anopheles
gambiae|Rep: Gag-like protein - Anopheles gambiae
(African malaria mosquito)
Length = 724
Score = 31.5 bits (68), Expect = 6.0
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -1
Query: 346 FRCLGLGHNSPVCPSGSERGSPSFRCGEQGYKVVHC 239
+RCL LGH + C S +R + RCG G+ C
Sbjct: 663 YRCLELGHWAHDCRSPDDRQNMCIRCGVVGHMAKVC 698
>UniRef50_Q868R1 Cluster: Gag-like protein; n=1; Anopheles
gambiae|Rep: Gag-like protein - Anopheles gambiae
(African malaria mosquito)
Length = 468
Score = 31.5 bits (68), Expect = 6.0
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -1
Query: 355 LQYFRCLGLGHNSPVCPSGSERGSPSFRCGEQGYKVVHCK 236
L+ +RCL GH S C S + RCG G+ C+
Sbjct: 404 LRCYRCLERGHVSRDCHSPVNHSNVCIRCGTSGHLAATCE 443
>UniRef50_Q55AJ7 Cluster: Putative uncharacterized protein; n=2;
Dictyostelium discoideum|Rep: Putative uncharacterized
protein - Dictyostelium discoideum AX4
Length = 772
Score = 31.5 bits (68), Expect = 6.0
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = -1
Query: 343 RCLGLGHNSPVCPSGSERGSPSFRCGEQGYKVVHC 239
RC H S CP E P FRCGE G+++ C
Sbjct: 278 RCGDHDHFSFECPHDIEE-KPCFRCGEFGHQIASC 311
>UniRef50_Q1JTH7 Cluster: Putative uncharacterized protein precursor;
n=2; cellular organisms|Rep: Putative uncharacterized
protein precursor - Toxoplasma gondii RH
Length = 1404
Score = 31.5 bits (68), Expect = 6.0
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +3
Query: 15 RSIQAPTRGDGHPGQTRPSLRQLSHPFPWFGNTTVSRFRKNLAPSH 152
RS+ A T+GDG G +L +S F + T R R+ L+P H
Sbjct: 953 RSLSAQTKGDGAHGSPASALSVVSSCFAASLSNTPKRLRRCLSPYH 998
>UniRef50_Q59R87 Cluster: Potential retrotransposon gag-like
protein; n=1; Candida albicans|Rep: Potential
retrotransposon gag-like protein - Candida albicans
(Yeast)
Length = 324
Score = 31.5 bits (68), Expect = 6.0
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = -1
Query: 355 LQYFRCLGLGHNSPVCPSGSERGS-PSFRCGEQGYK 251
+Q C GLGHNS CPS G P G+K
Sbjct: 249 VQCLNCFGLGHNSSDCPSPERDGMIPQLETRLNGFK 284
>UniRef50_A7F652 Cluster: Predicted protein; n=1; Sclerotinia
sclerotiorum 1980|Rep: Predicted protein - Sclerotinia
sclerotiorum 1980
Length = 1049
Score = 31.5 bits (68), Expect = 6.0
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +1
Query: 1 YLSHPVPS-RPPPEEMVTPARPGHLLDSFPTPS 96
+ + P+PS RPPP +V G D+FP PS
Sbjct: 113 FYNFPLPSTRPPPSPVVPKGIDGSTFDNFPLPS 145
>UniRef50_Q8AII1 Cluster: Gag-Pol polyprotein (Pr160Gag-Pol)
[Contains: Matrix protein p17 (MA); Capsid protein p24
(CA); Nucleocapsid protein p7 (NC); p6-pol (p6*);
Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 2.7.7.7)
(EC 3.1.26.4) (p66 RT); p51 RT; p15; Integrase (IN)];
n=133; Primate lentivirus group|Rep: Gag-Pol polyprotein
(Pr160Gag-Pol) [Contains: Matrix protein p17 (MA);
Capsid protein p24 (CA); Nucleocapsid protein p7 (NC);
p6-pol (p6*); Protease (EC 3.4.23.16) (Retropepsin)
(PR); Reverse transcriptase/ribonuclease H (EC 2.7.7.49)
(EC 2.7.7.7) (EC 3.1.26.4) (p66 RT); p51 RT; p15;
Integrase (IN)] - Simian immunodeficiency virus (isolate
TAN1) (SIV-cpz) (Chimpanzeeimmunodeficiency virus)
Length = 1462
Score = 31.5 bits (68), Expect = 6.0
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = -1
Query: 355 LQYFRCLGLGHNSPVCPSGSERGSPSFRCGEQGYKVVHC 239
LQ F C +GH + C + ++G +RCG++G+++ C
Sbjct: 417 LQCFNCGKVGHTARNCRAPRKKG--CWRCGQEGHQMKDC 453
>UniRef50_A4J2D3 Cluster: 4Fe-4S ferredoxin, iron-sulfur binding
domain protein; n=1; Desulfotomaculum reducens MI-1|Rep:
4Fe-4S ferredoxin, iron-sulfur binding domain protein -
Desulfotomaculum reducens MI-1
Length = 196
Score = 28.3 bits (60), Expect(2) = 7.2
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Frame = -1
Query: 148 LGARFFLNLDTVVFPNQGKGWESCLR---DGLVWPG*PSPRVGAWMER 14
LG R L + NQ +G CLR D L+W G P R+GA +ER
Sbjct: 144 LGRRPQLAREVYSLTNQ-EGAVQCLRETLDLLLWVGKPGERLGALLER 190
Score = 21.8 bits (44), Expect(2) = 7.2
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = -1
Query: 343 RCLGLGHNSPVCPSGSERGSPSFRCGEQGYKVV 245
+CL G + +CP+G + G GY+V+
Sbjct: 113 QCLNCGKCAKICPTG------AIYTGTTGYRVI 139
>UniRef50_UPI00015B4669 Cluster: PREDICTED: similar to gag-like
protein; n=1; Nasonia vitripennis|Rep: PREDICTED:
similar to gag-like protein - Nasonia vitripennis
Length = 385
Score = 31.1 bits (67), Expect = 7.9
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = -1
Query: 346 FRCLGLGHNSPVCPSGSERGSPSFRCGEQGYKVVHC 239
++CLG GH + C ++R F+ G +G+ C
Sbjct: 308 YKCLGFGHIAKKCTETNDRSKCCFKYGTEGHASKSC 343
>UniRef50_UPI00006A0F64 Cluster: UPI00006A0F64 related cluster; n=1;
Xenopus tropicalis|Rep: UPI00006A0F64 UniRef100 entry -
Xenopus tropicalis
Length = 357
Score = 31.1 bits (67), Expect = 7.9
Identities = 24/82 (29%), Positives = 33/82 (40%)
Frame = +3
Query: 72 LRQLSHPFPWFGNTTVSRFRKNLAPSHSCPNRPKWRPA*LAYYPCCDECYVLPHPLQCTT 251
++ + P G + S + P HS + P RP + P L L T
Sbjct: 251 IKPVYRPALMSGLPSYSPYTPPFLPLHSSLSAPTLRP----FCPYTPPYLPLHSSLSAPT 306
Query: 252 L*PCSPHLKLGLPRSDPEGQTG 317
L P P+ LPRS +GQTG
Sbjct: 307 LLPFCPYTPPFLPRSTVQGQTG 328
>UniRef50_Q21KX4 Cluster: Putative retaining b-glycosidase; n=1;
Saccharophagus degradans 2-40|Rep: Putative retaining
b-glycosidase - Saccharophagus degradans (strain 2-40 /
ATCC 43961 / DSM 17024)
Length = 1707
Score = 31.1 bits (67), Expect = 7.9
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -2
Query: 300 DQNGEAQVLGVGNRATRSYIVRGEAERNTHHNMGSML 190
++NG A V+G+G R G+A N H +MG +L
Sbjct: 1349 ERNGRAPVVGIGEPLDRWVFKVGDANGNPHPDMGRVL 1385
>UniRef50_A6GF06 Cluster: Putative uncharacterized protein; n=1;
Plesiocystis pacifica SIR-1|Rep: Putative
uncharacterized protein - Plesiocystis pacifica SIR-1
Length = 349
Score = 31.1 bits (67), Expect = 7.9
Identities = 18/42 (42%), Positives = 23/42 (54%)
Frame = -3
Query: 137 VFSESGHCRIPKPREGVGKLSKRWPGLAGVTISSGGGLDGTG 12
+F R+P PRE + L+ WPGLA V + G G GTG
Sbjct: 138 IFDAVRERRMP-PREQLFALAIAWPGLALVALGEGAGA-GTG 177
>UniRef50_A0U668 Cluster: Putative uncharacterized protein
precursor; n=6; Burkholderia|Rep: Putative
uncharacterized protein precursor - Burkholderia
cenocepacia MC0-3
Length = 750
Score = 31.1 bits (67), Expect = 7.9
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +1
Query: 70 LLDSFPTPSLGLGIRQCPDSEKTLHPAILALIGLNGDL-HS*HTTHVV 210
LLD FP + ++ D+EK HP AL GL G L H H H V
Sbjct: 11 LLDIFPVRGIQPPGQESQDTEKDQHPHAEALAGLLGRLGHPCHIGHQV 58
>UniRef50_Q41805 Cluster: Extensin-like protein precursor; n=15;
Magnoliophyta|Rep: Extensin-like protein precursor - Zea
mays (Maize)
Length = 1188
Score = 31.1 bits (67), Expect = 7.9
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Frame = +1
Query: 13 PVPSRPPPEEMVTPARPGHLL---DSFPTPSLGLGIRQCPDSEKTLHPAIL 156
PV S PPPE+ P P + +PTP ++ P EK+L P L
Sbjct: 644 PVSSPPPPEKSPPPPPPAKSTPPPEEYPTPP--TSVKSSPPPEKSLPPPTL 692
>UniRef50_Q5TW49 Cluster: ENSANGP00000028013; n=1; Anopheles gambiae
str. PEST|Rep: ENSANGP00000028013 - Anopheles gambiae
str. PEST
Length = 474
Score = 31.1 bits (67), Expect = 7.9
Identities = 29/88 (32%), Positives = 32/88 (36%), Gaps = 1/88 (1%)
Frame = +3
Query: 24 QAPTRGDGHPGQTRPSLRQLSHPFPWFGNTTVSRFRKNLAPSHSCPNR-PKWRPA*LAYY 200
+A T GHP RPS L P P S RK APS S R P R AY
Sbjct: 20 RAGTPAPGHPSTPRPSSAALMPPPP----VVASVSRKRSAPSASSTKRPPSGRADPSAYL 75
Query: 201 PCCDECYVLPHPLQCTTL*PCSPHLKLG 284
+ +P L P S H G
Sbjct: 76 SSPSQSISMPPSAYSMALPPPSNHPPAG 103
>UniRef50_Q9IDV9 Cluster: Gag-Pol polyprotein (Pr160Gag-Pol)
[Contains: Matrix protein p17 (MA); Capsid protein p24
(CA); Spacer peptide p2; Nucleocapsid protein p7 (NC);
Transframe peptide (TF); p6-pol (p6*); Protease (EC
3.4.23.16) (Retropepsin) (PR); Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 2.7.7.7)
(EC 3.1.26.4) (p66 RT); p51 RT; p15; Integrase (IN)];
n=97846; Retroviridae|Rep: Gag-Pol polyprotein
(Pr160Gag-Pol) [Contains: Matrix protein p17 (MA);
Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid
protein p7 (NC); Transframe peptide (TF); p6-pol (p6*);
Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 2.7.7.7)
(EC 3.1.26.4) (p66 RT); p51 RT; p15; Integrase (IN)] -
Human immunodeficiency virus type 1 (isolate YBF106
group N) (HIV-1)
Length = 1449
Score = 31.1 bits (67), Expect = 7.9
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = -1
Query: 370 G*SKPLQYFRCLGLGHNSPVCPSGSERGSPSFRCGEQGYKVVHCKG*G 227
G K ++ F C GH + C + RG ++CG++G+++ CK G
Sbjct: 387 GIRKTIKCFNCGKEGHLARNCKAPRRRGC--WKCGQEGHQMKDCKNEG 432
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 535,716,682
Number of Sequences: 1657284
Number of extensions: 13419360
Number of successful extensions: 43096
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 39266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42916
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 16080341554
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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