Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_A23
         (394 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz...    28   0.45 
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    26   2.4  
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos...    25   4.2  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   5.5  
SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr 2|...    24   7.3  
SPAC22F3.12c |rgs1||regulator of G-protein signaling Rgs1|Schizo...    24   7.3  
SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces po...    24   7.3  
SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate syntha...    24   9.7  
SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr 1|||Ma...    24   9.7  

>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 218

 Score = 28.3 bits (60), Expect = 0.45
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -1

Query: 346 FRCLGLGHNSPVCPSGSERGSPSFRCGEQGYKVVHC 239
           F C   GH    CP   +  S  FRCG + + +  C
Sbjct: 80  FACRQQGHIVQDCPEAKDNVSICFRCGSKEHSLNAC 115


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 207 CDECYVLPHPLQCTTL*PCSPHLKLGLPRSDPEG 308
           C EC+ L   L+C  + PC    K G+P   P G
Sbjct: 22  CRECHRLK--LKCDRVWPCENCKKRGIPNLCPNG 53


>SPAC328.04 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 25.0 bits (52), Expect = 4.2
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 109 IRQCPDSEKTLHPAILALIGLNGD 180
           +R+CPD ++ L  +IL  I ++GD
Sbjct: 431 LRECPDIDEELGKSILREIVVSGD 454


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 15/44 (34%), Positives = 17/44 (38%)
 Frame = +1

Query: 19   PSRPPPEEMVTPARPGHLLDSFPTPSLGLGIRQCPDSEKTLHPA 150
            P  P P   V P  P       PTPS GL     P ++    PA
Sbjct: 1198 PPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPA 1241


>SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 272

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 8/38 (21%)
 Frame = +1

Query: 4   LSHPVPSRPPP-EEMVTPARPGHL-------LDSFPTP 93
           +SHP+P  PP  EE V+  R   L       L SFP+P
Sbjct: 171 VSHPLPPTPPSREEHVSVPRESSLFTYEDDPLPSFPSP 208


>SPAC22F3.12c |rgs1||regulator of G-protein signaling
          Rgs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 481

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = +1

Query: 19 PSRPPPE-EMVTPARPGHLLDS 81
          PS PPP  E VT  R G+ +DS
Sbjct: 7  PSSPPPSYEAVTSYRNGNSIDS 28


>SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 596

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 140 KVFSESGHCRIPKPREGVGKLSK 72
           K+ +  GH  IP P   +G +SK
Sbjct: 324 KLKTPGGHASIPPPHTNIGLMSK 346


>SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 541

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 94  SLGLGIRQCPDSEKTLHPAI 153
           ++G GIR   D + T HPA+
Sbjct: 320 TVGGGIRDVSDPDGTFHPAV 339


>SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 434

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 106 PNQGKGWESCLRDGL 62
           PNQG GW +   DGL
Sbjct: 115 PNQGFGWIALQNDGL 129


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,032,093
Number of Sequences: 5004
Number of extensions: 46989
Number of successful extensions: 113
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)