Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_A23
(394 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_49504| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.44
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.58
SB_12656| Best HMM Match : CS (HMM E-Value=0.0018) 30 0.77
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.0
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.0
SB_202| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.0
SB_42487| Best HMM Match : Extensin_2 (HMM E-Value=0.084) 28 2.3
SB_23827| Best HMM Match : DUF809 (HMM E-Value=9.1) 28 2.3
SB_18737| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.1
SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.1
SB_7302| Best HMM Match : DUF910 (HMM E-Value=2.2) 28 3.1
SB_32061| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.1
SB_7188| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.4
SB_3455| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.4
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.4
SB_28356| Best HMM Match : AAA_5 (HMM E-Value=0) 27 5.4
SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.4
SB_25222| Best HMM Match : Flagellin_C (HMM E-Value=0.72) 27 7.2
SB_20734| Best HMM Match : Abi_HHR (HMM E-Value=3.59994e-42) 27 7.2
SB_39498| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.5
SB_21309| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.5
SB_1121| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.5
SB_17989| Best HMM Match : PAN (HMM E-Value=0.00015) 26 9.5
SB_4891| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.5
>SB_49504| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 138
Score = 30.7 bits (66), Expect = 0.44
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 280 LGFPVLIPKDRLGYCDPGPNTGSTARA 360
+GF +P+DR+ + PG +T STA A
Sbjct: 5 VGFTCALPQDRIEFLQPGGSTSSTAAA 31
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 30.3 bits (65), Expect = 0.58
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = -1
Query: 343 RCLGLGHNSPVCPSGSERGSPSFRCGEQGYKVVHCKG*G 227
+C GH + CP+ G+ F+C E G+ C G
Sbjct: 468 KCNEEGHFARECPNADSGGNKCFKCNESGHFARECPNSG 506
>SB_12656| Best HMM Match : CS (HMM E-Value=0.0018)
Length = 277
Score = 29.9 bits (64), Expect = 0.77
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = +2
Query: 8 PIPFHPGPHPRRWSPRPDQAIS*TAF--PPLPL 100
P P HP P P SP P +I + + PP PL
Sbjct: 147 PFPIHPSPFPLHPSPLPATSIPPSRYIHPPFPL 179
>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6489
Score = 29.5 bits (63), Expect = 1.0
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -3
Query: 98 REGVGKLSKRWPGLAGVTISSG 33
++G GKLS+ W G AG+ +S G
Sbjct: 5513 KKGHGKLSQNWSGRAGIGLSGG 5534
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 29.5 bits (63), Expect = 1.0
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -1
Query: 343 RCLGLGHNSPVCPSGSERGSPSFRCGEQGYKVVHC 239
+C +GH + CP+G + +CGE G+ C
Sbjct: 384 KCGEVGHFARECPTGRGQSDTCHKCGETGHYSREC 418
>SB_202| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 73
Score = 29.5 bits (63), Expect = 1.0
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +3
Query: 48 HPGQTRPSLRQLSHPFPWFGNTTVSRFRKNLAPSHSCPNRP 170
H GQ + + + PF +T SRF+ H+C +RP
Sbjct: 3 HEGQKNSYVNRQAFPFSGIVDTNQSRFQAEKWQQHNCRSRP 43
>SB_42487| Best HMM Match : Extensin_2 (HMM E-Value=0.084)
Length = 635
Score = 28.3 bits (60), Expect = 2.3
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 11 IPFHPGPHPRRWSPRPDQAIS*TAFPPLP 97
+PFHP RR +P P + IS T P +P
Sbjct: 196 VPFHPAGFHRRVTP-PSRGISQTRHPSIP 223
>SB_23827| Best HMM Match : DUF809 (HMM E-Value=9.1)
Length = 159
Score = 28.3 bits (60), Expect = 2.3
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Frame = +1
Query: 193 HTTHVVMS--VTFCLTPYNVRPC 255
H T+ V S VT+C+TPY+V C
Sbjct: 12 HMTYYVTSYHVTYCMTPYHVPDC 34
>SB_18737| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 696
Score = 27.9 bits (59), Expect = 3.1
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = -2
Query: 375 DRVNLSP---CSTSGVWAWVTIAQSVLRDQNGEAQVLGVGNRAT 253
DR+N S C+ S VW + + QSV R+ ++G+ A+
Sbjct: 182 DRINYSSEIQCTFSQVWTDMALEQSVNRESKTRGSIVGLTQNAS 225
>SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4554
Score = 27.9 bits (59), Expect = 3.1
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = +3
Query: 15 RSIQAPTRGDGHPGQTRPSL 74
RS QAPT+G GQ RPSL
Sbjct: 57 RSTQAPTQGGQSYGQRRPSL 76
>SB_7302| Best HMM Match : DUF910 (HMM E-Value=2.2)
Length = 288
Score = 27.9 bits (59), Expect = 3.1
Identities = 14/27 (51%), Positives = 14/27 (51%)
Frame = +1
Query: 13 PVPSRPPPEEMVTPARPGHLLDSFPTP 93
P P PP TP RPG LDS TP
Sbjct: 211 PKPVNKPP---ATPPRPGSTLDSIVTP 234
>SB_32061| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 919
Score = 27.5 bits (58), Expect = 4.1
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +2
Query: 8 PIPFHPGPHPRRWSPRPDQAIS*TAFPPLPLVWEYDSVQI 127
P+ H GP P R + PD + T P+ + +D+V++
Sbjct: 575 PVRVHTGPDPVRVNTGPDPVRTYTGHDPVRVYTGHDTVRV 614
>SB_7188| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1094
Score = 27.1 bits (57), Expect = 5.4
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +2
Query: 23 PGPHPRRWSPRPDQAIS*TAFPPLPL 100
PGPHP W P P +S P PL
Sbjct: 240 PGPHPGHWQP-PRSRVSTPGRPHSPL 264
>SB_3455| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 587
Score = 27.1 bits (57), Expect = 5.4
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +1
Query: 1 YLSHPVPSRPPPEEM--VTPARPGHLLDSFPTPSLGLGIRQCPDSEKTL 141
++ +PVP R PPE++ P+ P P P G R+ S +L
Sbjct: 535 HVPYPVPIRSPPEQVPFPVPSPPEIFFQRVPVPCTGAKRRKSTHSLTSL 583
>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4529
Score = 27.1 bits (57), Expect = 5.4
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +1
Query: 4 LSHPVPSRPPPEEMVTPARPGHL 72
L HP P PPP + V PG +
Sbjct: 2349 LRHPAPGLPPPPQQVPGILPGQV 2371
>SB_28356| Best HMM Match : AAA_5 (HMM E-Value=0)
Length = 1737
Score = 27.1 bits (57), Expect = 5.4
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +3
Query: 75 RQLSHPFPWFGNTTVSRFRKNLAPSHSCPNRPKWRP 182
RQ S P PW VS ++ L H KW P
Sbjct: 847 RQFSPPPPWLRVCVVSPVKQRLVAKHCSRTLIKWFP 882
>SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1506
Score = 27.1 bits (57), Expect = 5.4
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +1
Query: 19 PSRPPPEEMVTPARPGHLLDSFP 87
PS PPPE + R H D+FP
Sbjct: 551 PSFPPPEGCINLDRAEHYTDNFP 573
>SB_25222| Best HMM Match : Flagellin_C (HMM E-Value=0.72)
Length = 418
Score = 26.6 bits (56), Expect = 7.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 63 WSGRGDHLLGWGPGWNGMGQ 4
W G G H +GWG NG+G+
Sbjct: 195 WVG-GKHPMGWGKAANGLGK 213
>SB_20734| Best HMM Match : Abi_HHR (HMM E-Value=3.59994e-42)
Length = 426
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 13 PVPSRPPPEEMVTPARPGHLLDSFPTPS 96
PVP PP +VT P L +F +PS
Sbjct: 283 PVPPMTPPPAVVTAPPPAPPLPNFTSPS 310
>SB_39498| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 531
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -3
Query: 86 GKLSKRWPGLAGVTIS 39
GKLS+RWP +AG +S
Sbjct: 35 GKLSRRWPIIAGEQLS 50
>SB_21309| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1286
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 215 VLRSASPLTMYDLVALFPTPKTWA 286
+L++ P + DL LF TP++WA
Sbjct: 666 LLQTQGPYQLIDLGYLFTTPQSWA 689
>SB_1121| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 219
Score = 26.2 bits (55), Expect = 9.5
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = +1
Query: 49 TPARPGHLLDSFPTPSLGLGIRQCPDSEKT 138
TP P H DS PTP+ PDS T
Sbjct: 128 TPYSPLHTHDSIPTPTTPYSPLHIPDSIST 157
>SB_17989| Best HMM Match : PAN (HMM E-Value=0.00015)
Length = 99
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +1
Query: 64 GHLLDSFPTPSLGLGIRQCPDSEK 135
GHLLDSFP + +C +K
Sbjct: 34 GHLLDSFPVEHMHFCFERCKSRDK 57
>SB_4891| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 405
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +1
Query: 64 GHLLDSFPTPSLGLGIRQCPDSEK 135
GHLLDSFP + +C +K
Sbjct: 38 GHLLDSFPVEHMHFCFERCKSRDK 61
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,523,914
Number of Sequences: 59808
Number of extensions: 431332
Number of successful extensions: 1127
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1124
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 678472135
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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