Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_A23
(394 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 38 0.003
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 38 0.003
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 38 0.003
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 38 0.003
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 38 0.003
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 38 0.003
Z81039-2|CAB02774.1| 2150|Caenorhabditis elegans Hypothetical pr... 31 0.39
U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog (hedg... 31 0.39
M85149-1|AAA28144.1| 2150|Caenorhabditis elegans zinc finger pro... 31 0.39
Z83113-2|CAB05544.1| 479|Caenorhabditis elegans Hypothetical pr... 29 0.90
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 28 2.1
Z81146-5|CAB03522.3| 699|Caenorhabditis elegans Hypothetical pr... 27 4.8
AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical ... 27 4.8
U41545-3|ABN43093.1| 152|Caenorhabditis elegans Hypothetical pr... 27 6.3
AF003386-14|AAK82896.1| 811|Caenorhabditis elegans Hypothetical... 27 6.3
U41039-6|AAK68626.1| 135|Caenorhabditis elegans Synapse defecti... 26 8.4
U41039-5|AAL11488.1| 357|Caenorhabditis elegans Synapse defecti... 26 8.4
U41039-4|AAL11489.1| 452|Caenorhabditis elegans Synapse defecti... 26 8.4
U41039-3|AAK68627.2| 537|Caenorhabditis elegans Synapse defecti... 26 8.4
AL117195-26|CAB55037.1| 153|Caenorhabditis elegans Hypothetical... 26 8.4
AF000265-4|AAK68198.1| 457|Caenorhabditis elegans Hypothetical ... 26 8.4
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 37.9 bits (84), Expect = 0.003
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = -1
Query: 358 PLQYFRCLGLGHNSPVCPSGSERGSPSFRCGEQGYKVVHC 239
P++ F C G GH S CP RG F CGEQG++ C
Sbjct: 241 PMKCFNCKGEGHRSAECPE-PPRG--CFNCGEQGHRSNEC 277
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 37.9 bits (84), Expect = 0.003
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = -1
Query: 358 PLQYFRCLGLGHNSPVCPSGSERGSPSFRCGEQGYKVVHC 239
P++ F C G GH S CP RG F CGEQG++ C
Sbjct: 452 PMKCFNCKGEGHRSAECPE-PPRG--CFNCGEQGHRSNEC 488
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 37.9 bits (84), Expect = 0.003
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = -1
Query: 358 PLQYFRCLGLGHNSPVCPSGSERGSPSFRCGEQGYKVVHC 239
P++ F C G GH S CP RG F CGEQG++ C
Sbjct: 452 PMKCFNCKGEGHRSAECPE-PPRG--CFNCGEQGHRSNEC 488
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 37.9 bits (84), Expect = 0.003
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = -1
Query: 358 PLQYFRCLGLGHNSPVCPSGSERGSPSFRCGEQGYKVVHC 239
P++ F C G GH S CP RG F CGEQG++ C
Sbjct: 241 PMKCFNCKGEGHRSAECPE-PPRG--CFNCGEQGHRSNEC 277
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 37.9 bits (84), Expect = 0.003
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = -1
Query: 358 PLQYFRCLGLGHNSPVCPSGSERGSPSFRCGEQGYKVVHC 239
P++ F C G GH S CP RG F CGEQG++ C
Sbjct: 241 PMKCFNCKGEGHRSAECPE-PPRG--CFNCGEQGHRSNEC 277
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 37.9 bits (84), Expect = 0.003
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = -1
Query: 358 PLQYFRCLGLGHNSPVCPSGSERGSPSFRCGEQGYKVVHC 239
P++ F C G GH S CP RG F CGEQG++ C
Sbjct: 452 PMKCFNCKGEGHRSAECPE-PPRG--CFNCGEQGHRSNEC 488
>Z81039-2|CAB02774.1| 2150|Caenorhabditis elegans Hypothetical protein
C25D7.3 protein.
Length = 2150
Score = 30.7 bits (66), Expect = 0.39
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +1
Query: 28 PPPEEMVTPARPGHL-LDSFPTPSLGLGIRQCPDSEKT 138
P PE++ RPGH+ + F TPSL G S KT
Sbjct: 1582 PEPEDLHETERPGHVGEEGFETPSLRTGRESTASSVKT 1619
>U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 6 protein.
Length = 559
Score = 30.7 bits (66), Expect = 0.39
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 1 YLSHPVPSRPPPEEMVTPARPGHLLD 78
Y+ PVP+RP P TPARP ++
Sbjct: 209 YIERPVPARPAPYIEPTPARPAPYIE 234
Score = 28.7 bits (61), Expect = 1.6
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +1
Query: 1 YLSHPVPSRPPPE-EMVTPARPGHLLDSFPTPS 96
Y+ PVP+RP P E PARP ++ P P+
Sbjct: 173 YIERPVPARPTPYIERPVPARPAPYIER-PEPA 204
>M85149-1|AAA28144.1| 2150|Caenorhabditis elegans zinc finger protein
protein.
Length = 2150
Score = 30.7 bits (66), Expect = 0.39
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +1
Query: 28 PPPEEMVTPARPGHL-LDSFPTPSLGLGIRQCPDSEKT 138
P PE++ RPGH+ + F TPSL G S KT
Sbjct: 1582 PEPEDLHETERPGHVGEEGFETPSLRTGRESTASSVKT 1619
>Z83113-2|CAB05544.1| 479|Caenorhabditis elegans Hypothetical
protein K08H10.4 protein.
Length = 479
Score = 29.5 bits (63), Expect = 0.90
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -2
Query: 384 ALPDRVNLSPCSTSGVWAWVTI 319
A PD VN+ P S GV++W T+
Sbjct: 158 AFPDAVNVMPGSDEGVYSWFTL 179
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 28.3 bits (60), Expect = 2.1
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +1
Query: 16 VPSRPPPEEMVTPARPGHLLDSFPTPSLGLGIRQCPDSEKT-LHPAILALIGLN 174
+P PP + P P P P GLG+ P KT ++PA+ L G N
Sbjct: 94 IPPPPPMMGGIPPPPPMFGAPPPPPPPSGLGVAPQPPRPKTPVNPALAKLGGKN 147
>Z81146-5|CAB03522.3| 699|Caenorhabditis elegans Hypothetical
protein K10D11.3 protein.
Length = 699
Score = 27.1 bits (57), Expect = 4.8
Identities = 10/43 (23%), Positives = 22/43 (51%)
Frame = +3
Query: 9 PSRSIQAPTRGDGHPGQTRPSLRQLSHPFPWFGNTTVSRFRKN 137
P++ Q PT+ + + +P+PW+ N+ + R++ N
Sbjct: 27 PTQDTQFPTKNNN---SSTDQYNPYYYPYPWWPNSYIPRYKSN 66
>AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical
protein K08D12.3a protein.
Length = 151
Score = 27.1 bits (57), Expect = 4.8
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Frame = -1
Query: 346 FRCLGLGHNSPVCPSG-SERGSPSF--RCGE-QGYKVVHCKG*GRT*HSSQ 206
+ C G GH S CPS SE GS + R GE + + C GR+ H S+
Sbjct: 70 YNCGGRGHYSRDCPSARSEGGSGGYGGRGGEGRSFGGQKCYNCGRSGHISR 120
>U41545-3|ABN43093.1| 152|Caenorhabditis elegans Hypothetical
protein C02F12.10 protein.
Length = 152
Score = 26.6 bits (56), Expect = 6.3
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 93 FPWFGNTTVSRFRKNLAPSHSCPNRPKWR 179
FPW +T S+ KN+ P NRP R
Sbjct: 17 FPWSNDTNSSQQIKNIKPPPKRSNRPTKR 45
>AF003386-14|AAK82896.1| 811|Caenorhabditis elegans Hypothetical
protein F59E12.1 protein.
Length = 811
Score = 26.6 bits (56), Expect = 6.3
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +1
Query: 16 VPSRPPPEEMVTPARPGHLLDSFPTPSLGLGIRQCPDSEKTLHPAI 153
+P PP + VT G L + TP+L + P +TL A+
Sbjct: 179 LPPTKPPGDDVTTGSRGFLTPTHSTPALDMSFFTPPRQMRTLADAV 224
>U41039-6|AAK68626.1| 135|Caenorhabditis elegans Synapse defective
protein 9, isoformb protein.
Length = 135
Score = 26.2 bits (55), Expect = 8.4
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +3
Query: 261 CSPHLKLGLPRSDPEGQTGLL*PRPKHRKYCK 356
CSP +L P SDP +G P P +CK
Sbjct: 43 CSPQRELS-PESDPSTSSGDSCPSPPKMLHCK 73
>U41039-5|AAL11488.1| 357|Caenorhabditis elegans Synapse defective
protein 9, isoforma protein.
Length = 357
Score = 26.2 bits (55), Expect = 8.4
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +3
Query: 261 CSPHLKLGLPRSDPEGQTGLL*PRPKHRKYCK 356
CSP +L P SDP +G P P +CK
Sbjct: 265 CSPQRELS-PESDPSTSSGDSCPSPPKMLHCK 295
>U41039-4|AAL11489.1| 452|Caenorhabditis elegans Synapse defective
protein 9, isoformd protein.
Length = 452
Score = 26.2 bits (55), Expect = 8.4
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +3
Query: 261 CSPHLKLGLPRSDPEGQTGLL*PRPKHRKYCK 356
CSP +L P SDP +G P P +CK
Sbjct: 360 CSPQRELS-PESDPSTSSGDSCPSPPKMLHCK 390
>U41039-3|AAK68627.2| 537|Caenorhabditis elegans Synapse defective
protein 9, isoformc protein.
Length = 537
Score = 26.2 bits (55), Expect = 8.4
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +3
Query: 261 CSPHLKLGLPRSDPEGQTGLL*PRPKHRKYCK 356
CSP +L P SDP +G P P +CK
Sbjct: 343 CSPQRELS-PESDPSTSSGDSCPSPPKMLHCK 373
>AL117195-26|CAB55037.1| 153|Caenorhabditis elegans Hypothetical
protein Y57A10A.32 protein.
Length = 153
Score = 26.2 bits (55), Expect = 8.4
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +1
Query: 13 PVPSRPPPEEMVTPARPGHLLDSFPT 90
P P PPP P L+D+FPT
Sbjct: 80 PAPPPPPPPPQYIRDLPQLLIDTFPT 105
>AF000265-4|AAK68198.1| 457|Caenorhabditis elegans Hypothetical
protein C18E3.6 protein.
Length = 457
Score = 26.2 bits (55), Expect = 8.4
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Frame = +1
Query: 13 PVPSRPPPEEMVTPARP---GHLLDSFPT 90
P P PPP ++ P++P G LL+S T
Sbjct: 222 PPPPPPPPISLIAPSKPSGVGALLESLNT 250
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,644,310
Number of Sequences: 27780
Number of extensions: 293141
Number of successful extensions: 842
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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