Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_A23
(394 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g24550.1 68416.m03083 protein kinase family protein contains ... 31 0.21
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein... 30 0.49
At2g48160.1 68415.m06031 PWWP domain-containing protein 30 0.64
At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein... 28 2.6
At5g62940.1 68418.m07897 Dof-type zinc finger domain-containing ... 27 3.4
At5g06800.1 68418.m00768 myb family transcription factor contain... 27 3.4
At4g28810.1 68417.m04119 expressed protein PMID: 12679534, putat... 27 4.5
At3g30842.1 68416.m03968 ABC transporter protein, putative simil... 27 4.5
At2g43800.1 68415.m05445 formin homology 2 domain-containing pro... 27 4.5
At2g28540.1 68415.m03467 expressed protein 27 4.5
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 27 6.0
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 27 6.0
At3g47920.1 68416.m05225 hypothetical protein similar to zinc fi... 27 6.0
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 27 6.0
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id... 27 6.0
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 27 6.0
At2g15910.1 68415.m01823 CSL zinc finger domain-containing prote... 27 6.0
At3g51300.1 68416.m05615 Rac-like GTP-binding protein (ARAC11) /... 26 7.9
At3g27260.1 68416.m03407 DNA-binding bromodomain-containing prot... 26 7.9
At2g32600.1 68415.m03980 hydroxyproline-rich glycoprotein family... 26 7.9
>At3g24550.1 68416.m03083 protein kinase family protein contains
Pfam domain PF00069: Protein kinase domain
Length = 652
Score = 31.5 bits (68), Expect = 0.21
Identities = 16/42 (38%), Positives = 18/42 (42%)
Frame = +1
Query: 13 PVPSRPPPEEMVTPARPGHLLDSFPTPSLGLGIRQCPDSEKT 138
P PS P P + P+ PG L P PS I P S T
Sbjct: 54 PPPSSPLPPSLPPPSPPGSLTPPLPQPSPSAPITPSPPSPTT 95
>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 551
Score = 30.3 bits (65), Expect = 0.49
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Frame = -1
Query: 364 SKPLQYFRCLGLGHNSPVCP---SGSERGSPSFRCGEQGYKVVHCK 236
SK + C GH + CP +G+ RCG+ G+ ++ CK
Sbjct: 205 SKGHDCYICKKTGHRAKDCPDKYKNGSKGAVCLRCGDFGHDMILCK 250
Score = 28.7 bits (61), Expect = 1.5
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -1
Query: 346 FRCLGLGHNSPVCPSGSERGSPSFRCGEQGYKVVHC 239
+ C GH S CP+ ++R P F CG + C
Sbjct: 169 YSCGEQGHTSFNCPTPTKRRKPCFICGSLEHGAKQC 204
>At2g48160.1 68415.m06031 PWWP domain-containing protein
Length = 1366
Score = 29.9 bits (64), Expect = 0.64
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 10 HPVPSRPPPEEMVTPARPGHLLDS 81
HP P PPP+ + PGH+L S
Sbjct: 1235 HPPPPPPPPQHQFSFREPGHVLKS 1258
>At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 268
Score = 27.9 bits (59), Expect = 2.6
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Frame = -1
Query: 343 RCLGLGHNSPVCPSGSERGSPS---FRCGEQGYKVVHC 239
+C GH+ CP + S + CG+ G+ + HC
Sbjct: 103 QCRRRGHSLKNCPEKNNESSEKKLCYNCGDTGHSLSHC 140
>At5g62940.1 68418.m07897 Dof-type zinc finger domain-containing
protein Dof zinc finger protein, Oryza sativa,
EMBL:AB028129
Length = 372
Score = 27.5 bits (58), Expect = 3.4
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -2
Query: 111 YSQTKGRGGKAV*EMAWSGRGDHLLGWGPGWNGM 10
YS G GG + G G ++ G G WNG+
Sbjct: 325 YSNGGGSGGAGKSDGGGYGNGGYINGLGSSWNGL 358
>At5g06800.1 68418.m00768 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 375
Score = 27.5 bits (58), Expect = 3.4
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +2
Query: 8 PIPFHPGPHPRRWSPRPDQAIS*TAFPPLP 97
P FHP H SP DQ++S PLP
Sbjct: 75 PSSFHPYHHQSSDSPSLDQSVSMIPMQPLP 104
>At4g28810.1 68417.m04119 expressed protein PMID: 12679534, putative
bHLH127 transcription factor
Length = 880
Score = 27.1 bits (57), Expect = 4.5
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +3
Query: 45 GHPGQTRPSLRQLSHPFPWFGNTTVSRFRKNLAPSHSCPNRPKW 176
GH PS L +PFP + +SR S+ PN+P++
Sbjct: 497 GHMAGVGPSYPALRYPFPDTQASDLSRVHVPSLHSNPVPNQPRF 540
>At3g30842.1 68416.m03968 ABC transporter protein, putative similar to
pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, ABC1 protein [Nicotiana
plumbaginifolia] GI:14331118; contains Pfam profile
PF00005: ABC transporter
Length = 1406
Score = 27.1 bits (57), Expect = 4.5
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = -1
Query: 169 GLLGQEWLGARFFLNL 122
G++G EW ++FFLN+
Sbjct: 1257 GMIGYEWTASKFFLNI 1272
>At2g43800.1 68415.m05445 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 894
Score = 27.1 bits (57), Expect = 4.5
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +1
Query: 7 SHPVPSRPPPEEMVT-PARPGHLLDSFPT 90
SHP P+ PPP + T PA LL FPT
Sbjct: 111 SHPPPAPPPPASLPTFPANISSLL--FPT 137
>At2g28540.1 68415.m03467 expressed protein
Length = 655
Score = 27.1 bits (57), Expect = 4.5
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 7 SHPVPSRPPPEEMVTPARPGHLLDSF 84
S P PSRPPP + R ++D F
Sbjct: 471 SVPTPSRPPPPGFSSNGRDHQMIDGF 496
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 26.6 bits (56), Expect = 6.0
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 346 FRCLGLGHNSPVCPSGSERGSPSFRCGEQGYKVVHCK 236
F C GH + C +G + +RCGE+G+ +CK
Sbjct: 102 FNCGVDGHWARDCTAGDWKNK-CYRCGERGHIERNCK 137
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 26.6 bits (56), Expect = 6.0
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 346 FRCLGLGHNSPVCPSGSERGSPSFRCGEQGYKVVHCK 236
F C GH + C +G + +RCGE+G+ +CK
Sbjct: 61 FNCGVDGHWARDCTAGDWKNK-CYRCGERGHIERNCK 96
>At3g47920.1 68416.m05225 hypothetical protein similar to zinc
finger protein [Arabidopsis thaliana] GI:976277
Length = 300
Score = 26.6 bits (56), Expect = 6.0
Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Frame = +1
Query: 7 SHPVPSRPPPEEMVTPARPGHLL---DSFPTPSLGL 105
S P P PPP + P G L +FP P GL
Sbjct: 182 SFPAPVLPPPRIVTPPLNHGEFLAAHPNFPAPREGL 217
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 26.6 bits (56), Expect = 6.0
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 346 FRCLGLGHNSPVCPSGSERGSPSFRCGEQGYKVVHCK 236
F C GH + C +G + +RCGE+G+ +CK
Sbjct: 61 FNCGVDGHWARDCTAGDWKNK-CYRCGERGHIERNCK 96
>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 260
Score = 26.6 bits (56), Expect = 6.0
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 346 FRCLGLGHNSPVCPSGSERGSPSFRCGEQGYKVVHCK 236
F C GH + C +G + +RCGE+G+ +CK
Sbjct: 72 FNCGVDGHWARDCTAGDWKNK-CYRCGERGHIERNCK 107
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 26.6 bits (56), Expect = 6.0
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 346 FRCLGLGHNSPVCPSGSERGSPSFRCGEQGYKVVHCK 236
F C GH + C +G + +RCGE+G+ +CK
Sbjct: 102 FNCGVDGHWARDCTAGDWKNK-CYRCGERGHIERNCK 137
>At2g15910.1 68415.m01823 CSL zinc finger domain-containing protein
contains Pfam PF05207: CSL zinc finger domain
Length = 367
Score = 26.6 bits (56), Expect = 6.0
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 340 CLGLGHNSPVCPSGSERGSPSFRCGEQG 257
C G G +S VC +G++ P+ +C G
Sbjct: 287 CKGTGSSSSVCLNGTDCAVPTSKCKANG 314
>At3g51300.1 68416.m05615 Rac-like GTP-binding protein (ARAC11) /
Rho-like GTP-binding protein (ROP1) identical to GTP
binding protein Rop1At [Arabidopsis thaliana]
GI:2558666, rac-like GTP binding protein Arac11
[Arabidopsis thaliana] GI:3603426
Length = 197
Score = 26.2 bits (55), Expect = 7.9
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +3
Query: 12 SRSIQAPTRGDGHPGQTRPSLRQLSHPFPW-FGNTTVSRFRKNLAPSHSCPNRPKWRPA 185
SR ++ T GDG G+T + S+ FP + T F N+ + S N W A
Sbjct: 4 SRFVKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTA 62
>At3g27260.1 68416.m03407 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 813
Score = 26.2 bits (55), Expect = 7.9
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 7/57 (12%)
Frame = +1
Query: 4 LSHPVPSR-PPPEEMVTPARPGHLLDSF------PTPSLGLGIRQCPDSEKTLHPAI 153
LS P + P E +P RP L SF P LGL ++Q D E+ PA+
Sbjct: 649 LSSSAPEQLPSSAEETSPERPLDALGSFNLRGSNPLEQLGLYMKQDDDEEEPEAPAV 705
>At2g32600.1 68415.m03980 hydroxyproline-rich glycoprotein family
protein similar to SWISS-PROT:Q15428
Length = 277
Score = 26.2 bits (55), Expect = 7.9
Identities = 14/45 (31%), Positives = 16/45 (35%)
Frame = +1
Query: 13 PVPSRPPPEEMVTPARPGHLLDSFPTPSLGLGIRQCPDSEKTLHP 147
P P PP + P P L P P G R P + HP
Sbjct: 231 PPPPPPPHQAQPPPPPPSGLFPPPPPPMANNGFRPMPPAGGFGHP 275
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,399,277
Number of Sequences: 28952
Number of extensions: 290922
Number of successful extensions: 918
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 567552648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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