Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_A22
         (416 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schiz...    28   0.67 
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git...    28   0.67 
SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces p...    25   3.6  
SPAC4F8.03 ||SPAC644.01c|SBDS family ribosome maturation protein...    25   3.6  
SPAC222.11 |hem13||coproporphyrinogen III oxidase |Schizosacchar...    25   3.6  
SPAC1B3.01c |||uracil phosphoribosyltransferase |Schizosaccharom...    25   4.7  
SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos...    25   4.7  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    24   8.2  

>SPBC16A3.14 |||mitochondrial ribosomal protein subunit
           S26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 277

 Score = 27.9 bits (59), Expect = 0.67
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +3

Query: 138 FIAESPDQWTVLELNQPLYIGGVPDFDQLP 227
           F A SP  WT  + N P  I  VPD+   P
Sbjct: 187 FQAGSPYLWTRWQSNDPHLISSVPDYSARP 216


>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
           Git5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 305

 Score = 27.9 bits (59), Expect = 0.67
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
 Frame = +3

Query: 189 LYIGGVPDFDQLPIDLAGASGFVGCISM-----LILGNEEKNIMALALEK 323
           +Y   VPD D  P++L G +GFV C        L+ G+ +K  M   +E+
Sbjct: 89  VYDTSVPDAD--PVELVGHAGFVSCCKYVDDGHLLTGSGDKTCMFWDIEQ 136


>SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 404

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 22/102 (21%), Positives = 41/102 (40%), Gaps = 2/102 (1%)
 Frame = +3

Query: 75  HTIRISRTGSRLTM-DVDNSGPF-IAESPDQWTVLELNQPLYIGGVPDFDQLPIDLAGAS 248
           H  R+    + L   +  N  P+ +  S D+W  L          V +   +P+  A  +
Sbjct: 227 HPARLQLAAALLAFPEFTNGSPYSLLLSDDRWEYLASLFTSNFTAVHNIPSVPLLHALLA 286

Query: 249 GFVGCISMLILGNEEKNIMALALEKENVQNCFTCAPNLCLNN 374
             +  +   +   +  +   LAL+ + V+ C  C P  CLN+
Sbjct: 287 AGLSSLKTPLCYLDANDDNPLALQSQTVKQCPVCTP--CLND 326


>SPAC4F8.03 ||SPAC644.01c|SBDS family ribosome maturation
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 246

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -3

Query: 249 QMLQRGQLEAGQSQEHHQ 196
           ++LQ+G  + G+ + HHQ
Sbjct: 86  EILQKGDFQVGEKERHHQ 103


>SPAC222.11 |hem13||coproporphyrinogen III oxidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 312

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -2

Query: 313 ARAMMFFSSLPSISMLIHPTKPDAP 239
           A+ + FF++   ISM+IHP  P AP
Sbjct: 93  AKELPFFAA--GISMVIHPRNPMAP 115


>SPAC1B3.01c |||uracil phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 219

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = +3

Query: 225 PIDLAGASGFVGCISMLILGNEEKNIMALAL--EKENVQNCFTCAPNLCLNNGVCQEALT 398
           P+   G S       ++ +G +++ I+ L +    E ++N     PN+ +   V  E L 
Sbjct: 139 PMLATGGSAICAMEILINMGCKQEQIIFLNVIASPEGLKNVHDRFPNIRIVTAVIDEGLD 198

Query: 399 EHGYV 413
            +GY+
Sbjct: 199 NNGYI 203


>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
           Rec8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 561

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +3

Query: 63  LNEWHTIRISRTGSRLTMDVDNSGPFIAESPDQWTVLELNQPLYIG 200
           L   H++R       +++D+D +  F+A SP+    L L+  L IG
Sbjct: 24  LGSKHSLRKLHKKDIMSVDIDEACDFVAFSPEP-LALRLSSNLMIG 68


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +2

Query: 251 FCRMYKHADTWQRREEHHGSSSRERKC 331
           + R+  H   WQ+ EE  G    + KC
Sbjct: 866 YVRLLMHHGLWQKLEEFLGELRTQTKC 892


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,702,694
Number of Sequences: 5004
Number of extensions: 33126
Number of successful extensions: 112
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)