Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_A22
(416 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1028 + 30230224-30231274,30231500-30231609,30232144-302321... 34 0.053
08_02_0067 - 11863092-11863104,11863432-11863547,11863610-118639... 29 1.5
05_03_0359 - 12929240-12929376,12931379-12933497,12933594-129337... 28 2.6
04_04_0071 - 22513684-22513697,22514052-22514328,22514417-225146... 27 4.6
12_01_0282 - 2088302-2089081 27 6.0
10_08_0740 + 20225351-20225683,20225750-20226022,20226423-202265... 27 6.0
08_01_0233 + 1876940-1877509,1907940-1908195,1908290-1908589,190... 27 6.0
04_04_0891 + 29130494-29130904,29131043-29131102,29131203-291314... 27 6.0
04_04_0376 + 24809804-24809888,24810575-24810703,24810797-248110... 27 6.0
03_01_0176 - 1416316-1416405,1416705-1416761,1416885-1417010,141... 27 6.0
01_06_1652 + 38918159-38918377,38918502-38919428 27 6.0
04_04_0867 + 28865857-28866657,28866778-28867113,28867248-288674... 27 8.0
>04_04_1028 +
30230224-30231274,30231500-30231609,30232144-30232170,
30233107-30234252
Length = 777
Score = 33.9 bits (74), Expect = 0.053
Identities = 16/30 (53%), Positives = 18/30 (60%)
Frame = -1
Query: 107 PGTGSADAYSVPFIKLQRSITFNFNNTSAS 18
PGT DAY +P Q +TF FN TSAS
Sbjct: 200 PGTACCDAYGMPLDDAQE-VTFEFNKTSAS 228
>08_02_0067 -
11863092-11863104,11863432-11863547,11863610-11863950,
11864978-11865331,11866055-11866150,11866812-11866980,
11867541-11867618,11867745-11867926,11868010-11868094,
11868545-11868648,11869510-11869590,11870123-11870240,
11871299-11871430,11871635-11871788,11871838-11871917
Length = 700
Score = 29.1 bits (62), Expect = 1.5
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -2
Query: 295 FSSLPSISMLIHPTKPDAPARSIGSWSKSGTPP 197
FSSL S ++HP D R+ GS S +GT P
Sbjct: 405 FSSLTSHRSVLHPRDIDIHVRTSGSVSLTGTNP 437
>05_03_0359 - 12929240-12929376,12931379-12933497,12933594-12933773,
12933905-12934118,12934199-12934551,12934642-12934864,
12934953-12935230,12935456-12935725,12935817-12935939,
12936025-12936102,12936351-12936527,12936597-12936686,
12937010-12937120,12937397-12937585,12937667-12937858,
12937990-12938076,12938153-12938257,12938340-12938396,
12938471-12938545,12938647-12938763,12938876-12939000,
12939082-12939121,12939241-12939291,12939382-12939569,
12939808-12939901,12939976-12940149,12940242-12940337,
12940597-12940689,12940794-12940955,12941034-12941240,
12941356-12941728,12942379-12942436,12943096-12943171,
12943874-12943941,12944321-12944642
Length = 2433
Score = 28.3 bits (60), Expect = 2.6
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = -1
Query: 266 YTSDKTRCSSEVNWKLVKVRNTTNVKRLIQF*YRPLIR--*LSNKWST 129
Y K S + W + +RNT N K L + +R L+R +SNK+S+
Sbjct: 1441 YNEMKYTPSRDRQWHIYTLRNTENPKMLHRVFFRTLVRQPSVSNKFSS 1488
>04_04_0071 -
22513684-22513697,22514052-22514328,22514417-22514659,
22515119-22515157
Length = 190
Score = 27.5 bits (58), Expect = 4.6
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +3
Query: 33 VKVKGDRPLQLNEWHTIRISRTGSRLTMDVDNSGPFIAESPD 158
V +KG RP+Q++ H + R+ ++N G F++ PD
Sbjct: 152 VLLKGGRPIQMSTDHDPNVERSA------IENRGGFVSNMPD 187
>12_01_0282 - 2088302-2089081
Length = 259
Score = 27.1 bits (57), Expect = 6.0
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -2
Query: 133 PLLSTSIVNLEPVLLMRIVCHSLSCKGRSPLTLTIPAP 20
PLL+ S+ NL + R++ S RSP+ L P+P
Sbjct: 70 PLLARSLSNLRLIPGRRLLPSSAPVISRSPVLLLFPSP 107
>10_08_0740 +
20225351-20225683,20225750-20226022,20226423-20226548,
20226676-20226732,20226994-20227083
Length = 292
Score = 27.1 bits (57), Expect = 6.0
Identities = 9/22 (40%), Positives = 10/22 (45%)
Frame = +2
Query: 239 WSIWFCRMYKHADTWQRREEHH 304
W+ W R HA W E HH
Sbjct: 139 WARWAHRALWHASLWHMHESHH 160
>08_01_0233 +
1876940-1877509,1907940-1908195,1908290-1908589,
1908777-1908939,1908958-1908994,1910122-1910742
Length = 648
Score = 27.1 bits (57), Expect = 6.0
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 234 LAGASGFVGCISMLILGNEEKNIMALALEKENVQNCFTCAPNLCLNNGV 380
L GAS F G ++ GN+E I+ E + + T ++ LN G+
Sbjct: 527 LGGASVFTGRVTAWTTGNDEDEIVLYDSEVADTRTEITADGSVQLNRGL 575
>04_04_0891 +
29130494-29130904,29131043-29131102,29131203-29131409,
29131520-29131645,29131767-29131823,29131946-29132014
Length = 309
Score = 27.1 bits (57), Expect = 6.0
Identities = 9/22 (40%), Positives = 10/22 (45%)
Frame = +2
Query: 239 WSIWFCRMYKHADTWQRREEHH 304
W+ W R HA W E HH
Sbjct: 163 WAQWAHRSLWHASLWHMHESHH 184
>04_04_0376 +
24809804-24809888,24810575-24810703,24810797-24811020,
24811398-24811607,24811697-24811789,24811899-24811937,
24812041-24812130,24812214-24812316,24812388-24812468,
24812929-24813005,24813156-24813236,24814165-24814256,
24814536-24814662
Length = 476
Score = 27.1 bits (57), Expect = 6.0
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +3
Query: 153 PDQWTVLELNQPLYIGGVPD 212
PD W L++N +Y+ G+PD
Sbjct: 222 PDSWFDLKVNTHVYVTGLPD 241
>03_01_0176 -
1416316-1416405,1416705-1416761,1416885-1417010,
1417944-1418150,1418235-1418714
Length = 319
Score = 27.1 bits (57), Expect = 6.0
Identities = 9/22 (40%), Positives = 10/22 (45%)
Frame = +2
Query: 239 WSIWFCRMYKHADTWQRREEHH 304
W+ W R HA W E HH
Sbjct: 166 WARWAHRALWHASLWHMHESHH 187
>01_06_1652 + 38918159-38918377,38918502-38919428
Length = 381
Score = 27.1 bits (57), Expect = 6.0
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -2
Query: 121 TSIVNLEPVLLMRIVCHSLSCKGRSPLTLTIPAPVS 14
+S++N P+LL+ +VC LS RS + + P S
Sbjct: 8 SSVINGAPLLLVVVVCFGLSPVARSQSSDSCSTPAS 43
>04_04_0867 +
28865857-28866657,28866778-28867113,28867248-28867451,
28867567-28867746
Length = 506
Score = 26.6 bits (56), Expect = 8.0
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 120 VDNSGPFIAESPDQWTVLELNQPLYIGGVPDFDQLPI 230
+D+SG F+AESP ++T + + +G + Q+ I
Sbjct: 429 LDDSGMFVAESPFKFTAFQAGPRICLGKEFAYRQMKI 465
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,227,683
Number of Sequences: 37544
Number of extensions: 223658
Number of successful extensions: 603
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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