Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_A22
         (416 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    23   1.8  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   1.8  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              21   4.2  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   4.2  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   5.6  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    21   7.4  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   7.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.4  

>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +3

Query: 75  HTIRISRTGSRLTMDVDNSGPFIAESPDQWTVLELNQP 188
           +T+R    GS+L M  D S  +  + P Q   ++ + P
Sbjct: 87  NTLRRGSDGSQLAMRNDRSPSYSMQVPQQGASIDDSDP 124


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +3

Query: 75  HTIRISRTGSRLTMDVDNSGPFIAESPDQWTVLELNQP 188
           +T+R    GS+L M  D S  +  + P Q   ++ + P
Sbjct: 535 NTLRRGSDGSQLAMRNDRSPSYSMQVPQQGASIDDSDP 572


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 58 KGRSPLTLTIPAP 20
          K   P+TLTIP P
Sbjct: 47 KFHKPITLTIPVP 59


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 16/51 (31%), Positives = 21/51 (41%)
 Frame = -2

Query: 406 PCSVSAS*QTPLLRQRLGAQVKQFWTFSFSRARAMMFFSSLPSISMLIHPT 254
           P   + S   P L   LGA    FW+   + AR    +SS   I +   PT
Sbjct: 309 PSDGATSEPFPFLMLPLGAGRPAFWSLRKAFARKKTDYSSFGKI-LATEPT 358


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
          protein MRJP5 protein.
          Length = 598

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 7/24 (29%), Positives = 16/24 (66%)
 Frame = -2

Query: 91 LMRIVCHSLSCKGRSPLTLTIPAP 20
          L+ +VC  ++C+G + +T+   +P
Sbjct: 5  LLLVVCLGIACQGITSVTVRENSP 28


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +2

Query: 317 RERKCPELFHLCP*SLSQQWCLSG 388
           R    P   HLC  + S+ W L G
Sbjct: 37  RTHTLPCKCHLCGKAFSRPWLLQG 60


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +2

Query: 299 HHGSSSRERKCPELF 343
           HH  SSRE  C + +
Sbjct: 441 HHVRSSRESSCEQTY 455


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = -2

Query: 46  PLTLTIPAPVSSKN 5
           PL+++IP P S++N
Sbjct: 759 PLSVSIPPPPSAQN 772


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,600
Number of Sequences: 438
Number of extensions: 2356
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10626762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)