Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_A22
(416 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g16260.1 68418.m01899 RNA recognition motif (RRM)-containing ... 31 0.41
At5g26160.1 68418.m03111 expressed protein 27 5.1
At4g25700.1 68417.m03700 beta-carotene hydroxylase identical to ... 27 5.1
At4g17390.1 68417.m02606 60S ribosomal protein L15 (RPL15B) 27 5.1
At4g16720.1 68417.m02526 60S ribosomal protein L15 (RPL15A) 27 5.1
At1g29120.2 68414.m03565 expressed protein 27 6.7
At1g29120.1 68414.m03564 expressed protein 27 6.7
At1g18390.1 68414.m02297 protein kinase family protein contains ... 27 6.7
At5g53490.2 68418.m06648 thylakoid lumenal 17.4 kDa protein, chl... 26 8.9
At5g43190.1 68418.m05276 F-box family protein (FBX6) contains si... 26 8.9
At4g20510.1 68417.m02990 expressed protein 26 8.9
At2g19540.1 68415.m02283 transducin family protein / WD-40 repea... 26 8.9
>At5g16260.1 68418.m01899 RNA recognition motif (RRM)-containing
protein similar to Tat-SF1 - Homo sapiens, GI:1667611;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 519
Score = 30.7 bits (66), Expect = 0.41
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +3
Query: 78 TIRISRTGSRLTMDVDNSGPFIAESPDQWTVLELNQPLYIGGVPD 212
T I+ G R + + + PD W L++N +Y+ G+PD
Sbjct: 241 TAEINSNGKRKLPEPETEKKEPNKPPDSWFELKVNPHIYVNGLPD 285
>At5g26160.1 68418.m03111 expressed protein
Length = 1058
Score = 27.1 bits (57), Expect = 5.1
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = -1
Query: 149 LSNKWSTVIDVHR*PGTGSADAYSVPFIKLQRSITFNFNNTSASF 15
L WS + D H G S A SVPF R++ F+N S S+
Sbjct: 934 LDTLWSIISDRHHQEGDLSNSAASVPF---TRNLDVIFSNESCSW 975
>At4g25700.1 68417.m03700 beta-carotene hydroxylase identical to
GI:1575296
Length = 310
Score = 27.1 bits (57), Expect = 5.1
Identities = 9/22 (40%), Positives = 10/22 (45%)
Frame = +2
Query: 239 WSIWFCRMYKHADTWQRREEHH 304
W+ W R HA W E HH
Sbjct: 152 WARWAHRALWHASLWNMHESHH 173
>At4g17390.1 68417.m02606 60S ribosomal protein L15 (RPL15B)
Length = 204
Score = 27.1 bits (57), Expect = 5.1
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -2
Query: 283 PSISMLIHPTKPDAPARSIGSWSKSG 206
PSI L+ PT+PD AR +G +K G
Sbjct: 34 PSIVRLVRPTRPD-KARRLGYKAKQG 58
>At4g16720.1 68417.m02526 60S ribosomal protein L15 (RPL15A)
Length = 204
Score = 27.1 bits (57), Expect = 5.1
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -2
Query: 283 PSISMLIHPTKPDAPARSIGSWSKSG 206
PSI L+ PT+PD AR +G +K G
Sbjct: 34 PSIVRLVRPTRPD-KARRLGYKAKQG 58
>At1g29120.2 68414.m03565 expressed protein
Length = 455
Score = 26.6 bits (56), Expect = 6.7
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = -2
Query: 139 NGPLLSTSIVNLEPVLLMRIVCHSLSCKGRSPLTLTIPAPVSSK 8
N LL I LEP+ + + L +GR L + P+ K
Sbjct: 210 NSNLLRGRIAGLEPINFITLATPHLGVRGRKQLPFLLGVPILEK 253
>At1g29120.1 68414.m03564 expressed protein
Length = 455
Score = 26.6 bits (56), Expect = 6.7
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = -2
Query: 139 NGPLLSTSIVNLEPVLLMRIVCHSLSCKGRSPLTLTIPAPVSSK 8
N LL I LEP+ + + L +GR L + P+ K
Sbjct: 210 NSNLLRGRIAGLEPINFITLATPHLGVRGRKQLPFLLGVPILEK 253
>At1g18390.1 68414.m02297 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 605
Score = 26.6 bits (56), Expect = 6.7
Identities = 11/21 (52%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
Frame = +3
Query: 99 GSRL-TMDVDNSGPFIAESPD 158
GS + +DV+ SGP +A+SPD
Sbjct: 576 GSEMDVVDVNKSGPLVAQSPD 596
>At5g53490.2 68418.m06648 thylakoid lumenal 17.4 kDa protein,
chloroplast identical to SP:P81760 Thylakoid lumenal
17.4 kDa protein, chloroplast precursor (P17.4)
{Arabidopsis thaliana}
Length = 235
Score = 26.2 bits (55), Expect = 8.9
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = -2
Query: 169 TVH*SGDSAINGPLLSTSIVNLEPVLLMRIVCHSLSCKGRSPLTLTIPAPVSSKN 5
TVH SG++ NG + S+ L+ + S++C TLTI +PV + N
Sbjct: 31 TVHCSGENRENGEGVKKSLFPLKEL-------GSIACAALCACTLTIASPVIAAN 78
>At5g43190.1 68418.m05276 F-box family protein (FBX6) contains
similarity to unusual floral organs (UFO) GI:4376159
from [Arabidopsis thaliana]
Length = 403
Score = 26.2 bits (55), Expect = 8.9
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +1
Query: 304 WL*L*RKKMSRIVSLVPLISVSTMVSVRKHLLSMVM 411
W L + I+SL+P ++ T+ S+ +HL S+++
Sbjct: 48 WSNLPNHLLEHILSLLPFKTLLTLRSISRHLRSLIL 83
>At4g20510.1 68417.m02990 expressed protein
Length = 413
Score = 26.2 bits (55), Expect = 8.9
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +3
Query: 15 ETGAGIVKVKGDRPLQLNEWHTIRISRTGSRLTMDVDNSGP 137
E AG+ + D+ + E R SR GS+ +++D+SGP
Sbjct: 290 EVNAGLTILDLDKDETVAELGISRRSREGSQPVINLDDSGP 330
>At2g19540.1 68415.m02283 transducin family protein / WD-40 repeat
family protein contains WD-40 repeats (PF00400); similar
to Glutamate-rich WD repeat protein (GRWD)
(SP:Q9BQ67)[Homo sapiens]
Length = 469
Score = 26.2 bits (55), Expect = 8.9
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 287 RREEHHGSSSRERKCPELFHLC 352
RR HHG +R R P+ H+C
Sbjct: 154 RRVAHHGCVNRIRAMPQNSHIC 175
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,990,867
Number of Sequences: 28952
Number of extensions: 178449
Number of successful extensions: 511
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 635399168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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