Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_A21
         (317 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy...    36   0.001
SPCC162.05 |coq3||hexaprenyldihydroxybenzoate methyltransferase|...    32   0.018
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer...    31   0.042
SPBC1347.09 |||hexaprenyldihydroxybenzoate methyltransferase|Sch...    27   0.69 
SPAC26A3.06 |||methyltransferase |Schizosaccharomyces pombe|chr ...    27   0.91 
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac...    26   1.2  
SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   1.6  
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    26   1.6  
SPBC18H10.10c |cwc16||complexed with Cdc5 protein Cwf16|Schizosa...    25   2.8  
SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr 1...    25   3.7  
SPCC965.05c |thp1||uracil DNA N-glycosylase Thp1 |Schizosaccharo...    25   3.7  
SPAC1B3.06c |||UbiE family methyltransferase |Schizosaccharomyce...    24   4.8  
SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr 3...    24   4.8  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    24   4.8  
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    24   6.4  
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    23   8.5  
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote...    23   8.5  
SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom...    23   8.5  

>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
           N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 543

 Score = 35.9 bits (79), Expect = 0.001
 Identities = 22/50 (44%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +3

Query: 171 RTQNYKDFLIGLLKKHGCKKVLDGACGTGIDSMMLVDEGFNLV-SVDASD 317
           RT+ Y+DF+         K VLD  CGTGI SM     G   V +VD SD
Sbjct: 239 RTEGYRDFVYHNKHIFAGKTVLDVGCGTGILSMFCAKAGAKKVYAVDNSD 288


>SPCC162.05 |coq3||hexaprenyldihydroxybenzoate
           methyltransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 271

 Score = 32.3 bits (70), Expect = 0.018
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
 Frame = +3

Query: 189 DFLIGLLKKHGC---KKVLDGACGTGIDSMMLVDEGFNLVSVDAS 314
           DF+  + ++  C   KK+LD  CG GI S  +   G ++ +VDAS
Sbjct: 64  DFMTEVFRERNCFSGKKILDIGCGGGILSESMARLGASVTAVDAS 108


>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
           Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 31.1 bits (67), Expect = 0.042
 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = +3

Query: 105 KDQYADGKAARAWNKFIGDSNERTQNYKDFLIGLLKKHGCKKVLDGACGTGIDSMMLVDE 284
           KD Y D  +    ++ +   + RT +Y+D ++        K VLD  CGTGI SM     
Sbjct: 16  KDYYFDSYSHWGIHEEMLKDDVRTLSYRDAIMQNPHLFRDKIVLDVGCGTGILSMFCARA 75

Query: 285 GF-NLVSVDASD 317
           G  ++  VD S+
Sbjct: 76  GAKHVYGVDMSE 87


>SPBC1347.09 |||hexaprenyldihydroxybenzoate
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 284

 Score = 27.1 bits (57), Expect = 0.69
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +3

Query: 210 KKHGCKKVLDGACGTGIDSMMLVDEGFNLVSVDAS 314
           KK G   +LD ACGTG+ S  L      +V +D S
Sbjct: 75  KKSGMS-ILDFACGTGLISQHLFPYCKQIVGIDVS 108


>SPAC26A3.06 |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 268

 Score = 26.6 bits (56), Expect = 0.91
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 204 LLKKHGCKKVLDGACGTGIDSMMLVDEGFNLVSVDAS 314
           LL   G   +LD  CG+GI + +   +G  +V +D S
Sbjct: 42  LLDAEGPSFILDIGCGSGISTQIGESQGHVVVGMDIS 78


>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
           Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 585

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 174 FFHYCLQ*ICSTLELPYRLHTDPLHPLKVY 85
           FF++ L  +  TL+  Y  H+D +HP  V+
Sbjct: 202 FFNFLLNSVTETLDEYYGNHSDVMHPKWVH 231


>SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 256

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 313 EASTETRLKPSSTSIMESIPVPQA 242
           ++STE ++ P  T I+  IPVP +
Sbjct: 215 KSSTELKIPPVETRIVAEIPVPSS 238


>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = +1

Query: 82  KVYLQRV*RISMQTVRQLERGTNSLETVMKEHKIIKTSSSGF*KNTDARKCWTVLAEQGL 261
           K+ L+R   +   T  +++  T   +   +E +I+   + G  KNT ARK    L + GL
Sbjct: 95  KLQLRR--ELDSLTAERVKNRTQEAQKEKEEKRIVTLQNDGGSKNTTARK-QKQLKKNGL 151

Query: 262 TP 267
            P
Sbjct: 152 RP 153


>SPBC18H10.10c |cwc16||complexed with Cdc5 protein
           Cwf16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 13/50 (26%), Positives = 22/50 (44%)
 Frame = -3

Query: 195 GSLYNFVFFHYCLQ*ICSTLELPYRLHTDPLHPLKVYLQISNEKLDPQTL 46
           GS Y    + + L+  C     P  +HTDP +   +       K++PQ +
Sbjct: 54  GSYYTTKIWSFSLK--CHLCSNPIDVHTDPKNTEYIVASGGRRKIEPQDI 101


>SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 588

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 15/57 (26%), Positives = 31/57 (54%)
 Frame = +3

Query: 120 DGKAARAWNKFIGDSNERTQNYKDFLIGLLKKHGCKKVLDGACGTGIDSMMLVDEGF 290
           + +A RA  +    S E     K+FL+G++ +H   K  D +C   ++ ++ +D+G+
Sbjct: 467 EAEALRADLETCKCSEEDEAGLKEFLLGVIDRH--LKEYD-SCRVRMEHVLQLDQGY 520


>SPCC965.05c |thp1||uracil DNA N-glycosylase Thp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 325

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +3

Query: 84  GIPSEGVKDQYADGKAARAWNKFIGDSNERTQNYK 188
           GI S G    Y+D K    WN F  + N   +  K
Sbjct: 288 GISSSGRAAGYSDEKKQNLWNLFAEEVNRHREIVK 322


>SPAC1B3.06c |||UbiE family methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 278

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 60  QVFHSRSEGIPSEGVKDQYADGKAARAWNKFIGDS 164
           +V HS +E +  +  KDQ    + A AW ++  DS
Sbjct: 228 RVLHS-NERLDDDDAKDQSLRKRVAEAWQRWKEDS 261


>SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 260

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 228 KVLDGACGTGIDSMMLVDEGFNLVSVDAS 314
           ++LD  CG G+ +  LV +   +V +DAS
Sbjct: 36  ELLDLGCGDGVLTNELVSQCRRVVGIDAS 64


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 25   RIASQIE*CLRIKFFIRDLKVYLQRV*RISMQT 123
            R +   E CL +K+  +DL++ ++     S+QT
Sbjct: 1287 RFSKATEQCLMVKYIKKDLEIEIEESCDFSIQT 1319


>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 307 STETRLKPSSTSIMESIPVPQAPSSTFLHP 218
           ++ T +KP   +   S P+P + SS  L+P
Sbjct: 41  NSTTFIKPPLETASSSTPIPSSSSSGVLNP 70


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 127 RQLERGTNSLETVMKEHKIIK 189
           + L+  TNSLET++ E K +K
Sbjct: 826 QSLKEKTNSLETLVSEKKELK 846


>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
           kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 132 LPYRLHTDPLHPLKVYLQISNEKL 61
           LP   HT+  HPL++  +IS  +L
Sbjct: 618 LPVSGHTNNAHPLRLSTEISASQL 641


>SPCC663.10 |||methyltransferase, DUF1613 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 502

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 234 LDGACGTGIDSMMLVDEGFNLVSVDA 311
           +D  CG G+   +L+ EG+N    DA
Sbjct: 280 VDVGCGNGLLVYLLLMEGYNGYGFDA 305


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,310,118
Number of Sequences: 5004
Number of extensions: 26040
Number of successful extensions: 94
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)