Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_A21
(317 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1445 + 26580293-26580610,26580814-26581314,26581411-265815... 34 0.021
09_01_0102 + 1582793-1582898,1582988-1583093,1584115-1584172,158... 28 1.8
08_02_1509 + 27611628-27611810,27611890-27612903,27612996-276139... 28 1.8
05_03_0369 - 13136146-13136175,13136237-13136908,13136926-131370... 27 2.4
09_02_0388 - 8450728-8450836,8451114-8451229,8451618-8451827 27 3.2
04_04_1585 + 34616343-34616531,34616677-34616742,34616842-346169... 27 3.2
01_06_0157 + 27075179-27075529,27075849-27076043,27077705-270780... 27 3.2
06_01_0375 + 2699179-2699264,2699697-2699786,2699913-2699991,270... 26 5.6
10_08_0451 + 18033065-18033253,18033746-18033805,18034256-180343... 26 7.4
08_02_0830 - 21617485-21618198 26 7.4
05_04_0240 + 19325981-19326260,19327135-19327156,19327361-193274... 26 7.4
02_01_0424 - 3097245-3099377 26 7.4
01_06_0498 + 29810105-29810401,29811448-29812726,29813969-298142... 26 7.4
08_02_1221 - 25371247-25371387,25371472-25372385,25372675-25373350 25 9.7
01_05_0764 + 25005657-25006186,25007107-25007250,25007414-25007879 25 9.7
>07_03_1445 +
26580293-26580610,26580814-26581314,26581411-26581508,
26581900-26581978,26582065-26582325,26582409-26582576,
26582800-26583237
Length = 620
Score = 34.3 bits (75), Expect = 0.021
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +3
Query: 147 KFIGDSNERTQNYKDFLIGLLKKHGCKKVLDGACGTGIDSMMLVDEGFN-LVSVDAS 314
+ +GD RT+ Y+D L+G VLD CGTGI S+ G + +++VD S
Sbjct: 268 EMLGDK-VRTEAYRDALLGNPSLMNGATVLDVGCGTGILSLFAAKAGASRVIAVDGS 323
>09_01_0102 +
1582793-1582898,1582988-1583093,1584115-1584172,
1584676-1584745,1585132-1585197,1586374-1586429,
1587992-1588078,1588819-1589139,1589827-1589946,
1590747-1590881,1591529-1591605,1591681-1591756,
1592800-1592874,1592971-1593075,1593299-1593374,
1594482-1594617,1594702-1594804,1595186-1595298,
1596907-1597111,1597173-1597301,1597403-1597517,
1597710-1597795,1599108-1599203,1599615-1599751,
1600374-1600476,1601809-1601888,1602013-1602091,
1602241-1602298,1602489-1602586,1602673-1602767,
1602861-1602918
Length = 1074
Score = 27.9 bits (59), Expect = 1.8
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +3
Query: 147 KFIGDSNERTQNYKDFLIGLLKKHGCKKVLDGACGTGIDSMMLVDEG 287
K + D N+R YK+F+ G+ ++ G VL+ D + ++G
Sbjct: 762 KALQDENDRRACYKEFIDGVYREVGPSNVLEKEIERVKDKLQTAEQG 808
>08_02_1509 +
27611628-27611810,27611890-27612903,27612996-27613978,
27614079-27614352
Length = 817
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 263 VNPCSASTVQHFLASVFFQKPDEEVFIILCS 171
++PCS V H +A+VFF D+ + L S
Sbjct: 645 LHPCSDRAVTHVVAAVFFGGADDREAVSLAS 675
>05_03_0369 -
13136146-13136175,13136237-13136908,13136926-13137016,
13137184-13137416,13137459-13137731,13137877-13138265,
13138325-13139156,13139847-13139922,13140027-13140414,
13141395-13141748,13142069-13142333,13143366-13143716
Length = 1317
Score = 27.5 bits (58), Expect = 2.4
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -1
Query: 272 HHGVNPCSASTVQHFLAS 219
HHG NP +A+T +F AS
Sbjct: 410 HHGTNPTTAATTTNFTAS 427
>09_02_0388 - 8450728-8450836,8451114-8451229,8451618-8451827
Length = 144
Score = 27.1 bits (57), Expect = 3.2
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -1
Query: 293 IETFVYQHHGVNPCSA 246
IETF+ Q G NPCS+
Sbjct: 92 IETFIVQSTGTNPCSS 107
>04_04_1585 +
34616343-34616531,34616677-34616742,34616842-34616910,
34617408-34617443,34617877-34617942,34618216-34618284,
34618394-34618471,34618674-34618752,34618866-34618960,
34619056-34619140,34619390-34619571,34619681-34619799,
34620529-34620550
Length = 384
Score = 27.1 bits (57), Expect = 3.2
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +3
Query: 171 RTQNYKDFLIGLLKKHGCKKVLDGACGTGIDSMMLVDEGFNLV-SVDASD 317
RT Y+ ++ K K V+D CGTGI S+ G V +V+AS+
Sbjct: 67 RTDAYRSAIMHHQKFIEGKVVMDVGCGTGILSVFCARAGAKCVYAVEASE 116
>01_06_0157 +
27075179-27075529,27075849-27076043,27077705-27078036,
27078157-27078577
Length = 432
Score = 27.1 bits (57), Expect = 3.2
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 114 YADGKAARAWNKFIGDSNERTQNYKDFLIGLLKKHGCKKVL 236
++DG A G+ NE T DF++ +K+G K +L
Sbjct: 95 FSDGGGGNALQLSPGNYNENTFKGLDFVLSEARKYGIKVIL 135
>06_01_0375 +
2699179-2699264,2699697-2699786,2699913-2699991,
2700816-2700893,2701290-2701338,2702183-2702232,
2702704-2702853,2703437-2703517,2703593-2703609,
2705804-2705893,2706033-2706111,2706234-2706311,
2707554-2707687,2707858-2707936,2708108-2708188,
2708263-2708400
Length = 452
Score = 26.2 bits (55), Expect = 5.6
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +3
Query: 228 KVLDGACGTGIDSMMLVDEGFNLVSVDASD 317
KV+D CG GI S L G + +DA D
Sbjct: 72 KVIDVGCGGGILSEPLARMGATVTGIDAVD 101
>10_08_0451 +
18033065-18033253,18033746-18033805,18034256-18034324,
18034751-18034786,18035081-18035146,18035345-18035443,
18035543-18035620,18035724-18035802,18035999-18036093,
18036251-18036335,18036505-18036698,18036804-18036922,
18037015-18037057
Length = 403
Score = 25.8 bits (54), Expect = 7.4
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +3
Query: 231 VLDGACGTGIDSMMLVDEG-FNLVSVDASD 317
VLD CGTG+ S+ G + +VDASD
Sbjct: 85 VLDVGCGTGVLSIFCAFAGAARVYAVDASD 114
>08_02_0830 - 21617485-21618198
Length = 237
Score = 25.8 bits (54), Expect = 7.4
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -2
Query: 289 KPSSTSIMESIPVPQAPSSTFLHPCFFKSP 200
K +STS ++ P P S F P FF SP
Sbjct: 192 KNNSTSQTTTMVKPPQPFSQFSGPAFFASP 221
>05_04_0240 +
19325981-19326260,19327135-19327156,19327361-19327484,
19327721-19327811,19327984-19328073,19328450-19328550,
19328702-19328866
Length = 290
Score = 25.8 bits (54), Expect = 7.4
Identities = 17/51 (33%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Frame = +3
Query: 108 DQYADGKAARAWNKFIGDSNERTQNYKDFLIGLLKKHGCKKV-LDGACGTG 257
D Y D A W + S E LI +LKK G V + G C G
Sbjct: 123 DPYTDDPARPFWVWIMAHSPEEAAEKTKPLIAVLKKEGMSSVGVGGYCWGG 173
>02_01_0424 - 3097245-3099377
Length = 710
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +3
Query: 216 HGCKKVLDGACGTGIDSMMLVDEGFNLVSVDASD 317
+G + VLDGA + +++++D GFN+ S + D
Sbjct: 254 NGLQGVLDGAGMIKLRNLVVLDLGFNMFSGNIPD 287
>01_06_0498 +
29810105-29810401,29811448-29812726,29813969-29814204,
29814327-29814968
Length = 817
Score = 25.8 bits (54), Expect = 7.4
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +3
Query: 219 GCKKVLDGACGTGIDSMMLVDEGFNLVSVDASD 317
G + D CGTG S+ + + ++V+ DAS+
Sbjct: 587 GHHRAWDAGCGTGQASISIAEHYDSVVATDASE 619
>08_02_1221 - 25371247-25371387,25371472-25372385,25372675-25373350
Length = 576
Score = 25.4 bits (53), Expect = 9.7
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = -2
Query: 250 PQAPSSTFLHPCFFKSPMRK 191
P P T++H CFF P ++
Sbjct: 548 PMKPKKTWVHFCFFSRPNKR 567
>01_05_0764 + 25005657-25006186,25007107-25007250,25007414-25007879
Length = 379
Score = 25.4 bits (53), Expect = 9.7
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +3
Query: 189 DFLIGLLKKHGCKKVLDGACGTGIDSMMLVDEGFNLVSVDA 311
D+L GLL G + LD AC + D+++ + ++ S D+
Sbjct: 75 DYLQGLLDPSGLARHLDVACPSSQDTVVKQELSVDVTSHDS 115
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,073,686
Number of Sequences: 37544
Number of extensions: 154985
Number of successful extensions: 414
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 398975940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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