Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_A21
         (317 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6783| Best HMM Match : Porphobil_deamC (HMM E-Value=5.8)           110   3e-25
SB_1712| Best HMM Match : Peptidase_C14 (HMM E-Value=1.6e-21)          27   3.3  
SB_23832| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.3  
SB_52816| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.4  
SB_7305| Best HMM Match : Extensin_2 (HMM E-Value=0.043)               26   5.8  
SB_4910| Best HMM Match : HECT (HMM E-Value=5.8e-33)                   26   5.8  
SB_23673| Best HMM Match : DUF855 (HMM E-Value=0.52)                   26   5.8  
SB_59799| Best HMM Match : 7tm_1 (HMM E-Value=5.3e-09)                 26   7.6  
SB_56933| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.6  
SB_3686| Best HMM Match : Myotub-related (HMM E-Value=2.8e-08)         26   7.6  
SB_51196| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.6  
SB_37195| Best HMM Match : Na_Ca_ex (HMM E-Value=0.56)                 26   7.6  
SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07)                    26   7.6  

>SB_6783| Best HMM Match : Porphobil_deamC (HMM E-Value=5.8)
          Length = 382

 Score =  110 bits (264), Expect = 3e-25
 Identities = 46/91 (50%), Positives = 67/91 (73%)
 Frame = +3

Query: 45  IMSADQVFHSRSEGIPSEGVKDQYADGKAARAWNKFIGDSNERTQNYKDFLIGLLKKHGC 224
           +MS D V+ +RS G+P+ G+ DQYADGKAA+ W  +IG   +RT++Y++F   LL++   
Sbjct: 148 VMSMDGVYRTRSLGVPATGIPDQYADGKAAKVWQHYIGGHKKRTESYREFFCNLLRERNI 207

Query: 225 KKVLDGACGTGIDSMMLVDEGFNLVSVDASD 317
             VLD +CGTG+DS+ML++ GF + SVDASD
Sbjct: 208 HNVLDVSCGTGVDSIMLLENGFCVTSVDASD 238


>SB_1712| Best HMM Match : Peptidase_C14 (HMM E-Value=1.6e-21)
          Length = 594

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -1

Query: 248 ASTVQHFLASVFFQKPDEEVFIILCSFI 165
           A++V H   S+  +KPDE + ++ CS +
Sbjct: 473 ATSVIHLTDSIHPRKPDEMLIVLTCSLV 500


>SB_23832| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 706

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 22/70 (31%), Positives = 32/70 (45%)
 Frame = +3

Query: 78  SEGIPSEGVKDQYADGKAARAWNKFIGDSNERTQNYKDFLIGLLKKHGCKKVLDGACGTG 257
           S  I  EG+ +  A     R W+  + +  +R   YK  +   +  +GC  VLD   G+G
Sbjct: 117 SSTIAREGL-ESVASALVER-WHFRMLNDRQRNLAYKKAISNAVS-NGCDIVLDIGSGSG 173

Query: 258 IDSMMLVDEG 287
           I SM  V  G
Sbjct: 174 ILSMFAVQAG 183


>SB_52816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1622

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +3

Query: 225 KKVLDGACGTGIDSMMLVDEG--FNLVSVDASD 317
           K VLD  CGTGI S+    EG    + +V+AS+
Sbjct: 153 KVVLDVGCGTGILSLFCAREGKASKVYAVEASE 185


>SB_7305| Best HMM Match : Extensin_2 (HMM E-Value=0.043)
          Length = 908

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 9/58 (15%)
 Frame = -2

Query: 286 PSSTSIMESIPVPQAPSSTFL-----HPCFF--KSPMRKSL*FCVLSLLSP--MNLFH 140
           PS+T +  +IP PQ P  T L     HP  F    P + SL F +    +P   +LFH
Sbjct: 698 PSNTLLHFAIPHPQIPHYTSLFRTLKHPTTFPYSGPSKTSLHFAISDPRTPYYTSLFH 755


>SB_4910| Best HMM Match : HECT (HMM E-Value=5.8e-33)
          Length = 958

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 9/58 (15%)
 Frame = -2

Query: 286 PSSTSIMESIPVPQAPSSTFL-----HPCFF--KSPMRKSL*FCVLSLLSP--MNLFH 140
           PS+T +  +IP PQ P  T L     HP  F    P + SL F +    +P   +LFH
Sbjct: 647 PSNTLLHFAIPHPQIPHYTSLFRTLKHPTTFPYSGPSKTSLHFAISDPRTPYYTSLFH 704


>SB_23673| Best HMM Match : DUF855 (HMM E-Value=0.52)
          Length = 380

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 5/70 (7%)
 Frame = +3

Query: 93  SEGVKDQYADGKAARAWNKFIGDS-----NERTQNYKDFLIGLLKKHGCKKVLDGACGTG 257
           S G KD+   G +      +  DS       RT  Y++ +         K VLD  CGTG
Sbjct: 137 SNGAKDKPKPGASEMTSADYYFDSYAHFDEVRTLTYRNSMYHNKHLFRDKIVLDVGCGTG 196

Query: 258 IDSMMLVDEG 287
           I SM     G
Sbjct: 197 ILSMFAAKAG 206


>SB_59799| Best HMM Match : 7tm_1 (HMM E-Value=5.3e-09)
          Length = 323

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = -1

Query: 170 FITVSNEFVPRSSCLTVCILILYTL*RYTFRSRMKNLIRRHYSICDAI 27
           FI  +N+     S  ++ ++ L  +    F  + + L  +HYS+C AI
Sbjct: 85  FIEFANDVAISGSLFSLTLIALERVYAVVFPLKHRLLRAKHYSVCIAI 132


>SB_56933| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 331

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -3

Query: 129 PYRLHTDPLHPLKVYLQI 76
           P  L+ DP +PL+V+LQ+
Sbjct: 136 PMALYGDPAYPLRVHLQV 153


>SB_3686| Best HMM Match : Myotub-related (HMM E-Value=2.8e-08)
          Length = 629

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -1

Query: 242 TVQHFLASVFFQKPDEEVFIILCSFITVSNEFVPRSSCLTVC 117
           T  H + S   Q+  EE+F+++     V  +FV + + LT+C
Sbjct: 112 TGHHLIFSSRTQR-SEELFLLISGVEHVEKKFVGQEAILTIC 152


>SB_51196| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 317

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +3

Query: 51  SADQVFHSRSEGIPSEGVKDQYADGKAARAWNKFIGDSNERTQN 182
           S +Q+   R +  PS+G+  +Y+DG+   +  +F+  + ER  N
Sbjct: 57  SLEQLLGKRHKK-PSQGINGKYSDGRRVHSL-EFLDSTGEREGN 98


>SB_37195| Best HMM Match : Na_Ca_ex (HMM E-Value=0.56)
          Length = 298

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -1

Query: 296 KIETFVYQHHGVNPCSASTVQHFLASVFF 210
           K+   + + +G+ PCS++   +FL  VF+
Sbjct: 100 KVAPCLEERNGIYPCSSTITGNFLLMVFY 128


>SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07)
          Length = 2128

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 301 ETRLKPSSTSIMESIPVPQAPSSTF 227
           ETR   S T  +ES+P PQ+   TF
Sbjct: 895 ETRYFQSETKPVESLPPPQSHQRTF 919


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,525,114
Number of Sequences: 59808
Number of extensions: 181821
Number of successful extensions: 567
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 413004273
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)