Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_A20
         (475 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    29   0.48 
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    27   1.5  
SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe...    26   2.5  
SPAC12D12.09 |rev7||DNA polymerase zeta Rev7 |Schizosaccharomyce...    26   2.5  
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    26   3.4  
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    26   3.4  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    25   5.9  
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo...    25   5.9  
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    25   7.8  
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    25   7.8  
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    25   7.8  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    25   7.8  

>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 28.7 bits (61), Expect = 0.48
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = -1

Query: 325 PMLQMQRLGPEQSPLGHPPAQRGLHLLSVRSIEYPGLQTH*LPSVQTPLMHGSEH 161
           P+L  +R+  E   +    +Q   +LL +  I+YP      LPS    LMH   H
Sbjct: 181 PVLNGERILSEAKRISWGGSQSSSYLLKLFQIKYPSFPIKMLPSQAELLMHDHCH 235


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 11/36 (30%), Positives = 14/36 (38%)
 Frame = +3

Query: 159 ECSEPCINGVCTEGNQCVCNPGYSMDLTDRRCKPRC 266
           +C E C N  C +G  C    G   D     C  +C
Sbjct: 330 DCGEDCENNPCCDGKTCKLTKGSLCDDQQDACCYQC 365


>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 746

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = +3

Query: 306 LCICNMGYHKDTSVKGRAVCVKRIRRSLNYFLSKK 410
           +CICN+ Y KD  +  + +   +   +L  +++K+
Sbjct: 690 VCICNIVYSKDQEIFNKFIKTPKAVETLRTYITKQ 724


>SPAC12D12.09 |rev7||DNA polymerase zeta Rev7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 213

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 121 EAMLTDKTHNVSLNVLNRASMEFARKAINVSAIPDI 228
           E + T   H V+L+++N+   E  R   +  +IP I
Sbjct: 70  EELQTGSVHQVALSIINKEQREEERYVFSTDSIPII 105


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +3

Query: 27  PRPDPFYQPHKPNQPDHHITPNRTNDLSSV 116
           P  D FY PH P +      PN    LS+V
Sbjct: 590 PLHDKFYVPHSPPKYTMETYPNNVLSLSTV 619


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 11  HYHISATT*SVLPTS*TKPTRS 76
           H+H S+++ +V PTS T PT S
Sbjct: 122 HHHSSSSSYAVSPTSPTSPTSS 143


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 38   SVLPTS*TKPTRSSHNPQPHQRSVLGPR 121
            S++P    KPT+  H   P  + +L PR
Sbjct: 997  SIIPIKPNKPTKPDHLVAPRVKPLLPPR 1024


>SPCC126.09 |||vacuolar membrane zinc transporter
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 418

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 407 ETKKHHLVCFNVCIVFSYIL 466
           E K+H  +CF + I+F+  L
Sbjct: 393 ENKRHSFICFTIGILFTLFL 412


>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -3

Query: 260 GLAPSIGKIHRISGIADTLIAFRANSIDARFRTFRETLCVLSV 132
           GL      I  ISGI   L A   N++ +   +FRE  C +++
Sbjct: 31  GLETKYSIISIISGIFIGLTAALLNALASLLNSFREGYCTVNI 73


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 182 WSLHGRQSMCLQSRIFYGSYR*KVQAPLCRWMS 280
           W LH  ++  L   +F G YR  +  P+C  +S
Sbjct: 448 WRLHKLRNDSLIVDLFQGMYRSTLVCPVCNTVS 480


>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 10/26 (38%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
 Frame = +3

Query: 153 FPECSEPCI-NGVCTEGNQCVCNPGY 227
           FP     C  N +C   N   C PGY
Sbjct: 364 FPSLCRTCPPNAICPSPNYVECKPGY 389



 Score = 24.6 bits (51), Expect = 7.8
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +3

Query: 279 PNGLCSGPNLCICNMGY 329
           PN +C  PN   C  GY
Sbjct: 373 PNAICPSPNYVECKPGY 389


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1564

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +1

Query: 145  HNVSLNVLNRASMEFARKAINVSAIPDILWILPI 246
            HNV + + +++ +  A K ++  +I DIL  +P+
Sbjct: 984  HNVDVQLTSKSLISLAEKRLDSFSINDILSQVPV 1017


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,154,884
Number of Sequences: 5004
Number of extensions: 48415
Number of successful extensions: 145
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)