Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_A20
(475 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0193 - 27359575-27361962 29 1.4
04_03_1022 - 21778315-21779007 29 1.9
01_01_1121 + 8893177-8893199,8893260-8893287,8893656-8893730,889... 29 1.9
05_05_0360 - 24395993-24397540,24397626-24397730,24398731-24399111 29 2.5
05_05_0020 - 21560896-21561352,21563399-21563480,21564143-215642... 29 2.5
02_05_1159 + 34563779-34564715,34567232-34567399,34567508-34568688 29 2.5
01_06_0678 - 31114259-31114321,31114508-31114552,31114644-311147... 29 2.5
02_05_1157 - 34533625-34533875,34535279-34536340,34536673-345368... 28 3.3
02_05_0958 + 33073302-33073442,33073839-33073913,33074382-330744... 28 3.3
06_02_0346 - 14837982-14838122,14838208-14838327,14838411-148385... 28 4.4
10_01_0318 + 3493913-3496976,3497064-3497392 27 5.8
04_04_1322 + 32640414-32642327 27 5.8
02_05_1177 + 34739359-34740304,34740401-34740568,34740672-34741852 27 5.8
11_08_0022 + 27733247-27733935,27735722-27735981,27736213-277364... 27 7.7
10_08_0026 - 14253680-14253894,14253981-14254109,14254704-142547... 27 7.7
04_04_0207 + 23602065-23604315,23604611-23605116 27 7.7
03_03_0156 + 14939355-14939435,14939559-14939624,14940331-149404... 27 7.7
>01_06_0193 - 27359575-27361962
Length = 795
Score = 29.5 bits (63), Expect = 1.4
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Frame = +3
Query: 180 NGVC--TEGNQCVCNPGYSM---DLTDRRCKPRCAGGC 278
NG+C + G +C C PGY M + R C+P + C
Sbjct: 291 NGICEYSPGLRCTCPPGYEMTDPENWSRGCRPTFSVSC 328
>04_03_1022 - 21778315-21779007
Length = 230
Score = 29.1 bits (62), Expect = 1.9
Identities = 15/42 (35%), Positives = 18/42 (42%)
Frame = +3
Query: 3 PNGTITYQPRPDPFYQPHKPNQPDHHITPNRTNDLSSVQGGH 128
P T P P P+ PH P+ HH P S+ GGH
Sbjct: 71 PPHTPAPAPAPGPYIPPHHPH---HHHPPTPAPAPSTTPGGH 109
>01_01_1121 +
8893177-8893199,8893260-8893287,8893656-8893730,
8894748-8894813,8894917-8894959,8895102-8895150,
8895899-8895992,8896078-8896130,8896921-8897005,
8897242-8897344,8897421-8897513,8897985-8898051,
8898309-8898375,8898463-8898516,8898632-8898766
Length = 344
Score = 29.1 bits (62), Expect = 1.9
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +3
Query: 270 GGCPNGLCSGPNLCICNMGY 329
G CPN C G CIC++ Y
Sbjct: 70 GQCPNKECKGKQGCICSISY 89
>05_05_0360 - 24395993-24397540,24397626-24397730,24398731-24399111
Length = 677
Score = 28.7 bits (61), Expect = 2.5
Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Frame = +3
Query: 18 TYQPRPDPFYQPHKPNQPDHHITPNRTNDLSSVQG-GHVNGQNTQRFPECSEPCINGVC 191
T P D F + + N D S + HV+ Q + P+ SEP +NG C
Sbjct: 472 TVSPETDIFLEKPLNKYSNQLCDRNEEEDDSGWETVSHVDEQGSSNSPDGSEPSVNGFC 530
>05_05_0020 -
21560896-21561352,21563399-21563480,21564143-21564263,
21564424-21565074,21565206-21565338,21565677-21565728,
21566115-21566244,21567241-21567300,21567444-21567536,
21567795-21567919,21568263-21568353,21568828-21569127,
21569415-21570038
Length = 972
Score = 28.7 bits (61), Expect = 2.5
Identities = 18/79 (22%), Positives = 32/79 (40%)
Frame = +3
Query: 165 SEPCINGVCTEGNQCVCNPGYSMDLTDRRCKPRCAGGCPNGLCSGPNLCICNMGYHKDTS 344
S P +NG + + C YS + + KP+C+ C C G + G D S
Sbjct: 635 SVPAVNGYHSTQERTSCEFRYSGEDVEGAAKPQCS--CGENACEGDHNGSSMRGLDSDDS 692
Query: 345 VKGRAVCVKRIRRSLNYFL 401
+ + ++ R + F+
Sbjct: 693 IGRKHHFRSKLSRKYHSFM 711
>02_05_1159 + 34563779-34564715,34567232-34567399,34567508-34568688
Length = 761
Score = 28.7 bits (61), Expect = 2.5
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 11/110 (10%)
Frame = +3
Query: 174 CINGVCTEGNQCVCNPGYS---------MDLT--DRRCKPRCAGGCPNGLCSGPNLCICN 320
CI+ + G +C C+ GY D+ +R K C G C N L G C+C
Sbjct: 284 CIDSIDGPGYRCNCSQGYEGNPYLDGGCQDINECERPDKYACFGECTNTL--GSYSCMCP 341
Query: 321 MGYHKDTSVKGRAVCVKRIRRSLNYFLSKKLKSII*FVSMYVSSLVIFCL 470
G D S+ C+++ + + L+ K+ + + V +++ L+ FCL
Sbjct: 342 RGARGDPSIP--QGCLEKDK----FTLALKVVTGV-SVGVFLPLLMYFCL 384
>01_06_0678 -
31114259-31114321,31114508-31114552,31114644-31114742,
31114827-31114872,31115026-31115102,31115385-31115432,
31120640-31120708,31120848-31120853,31120955-31121032,
31121246-31121344,31121427-31121489,31122642-31122713,
31122800-31122874,31122965-31123021,31123983-31124186,
31124317-31124394,31124485-31124547,31124646-31125284,
31125367-31125416,31125496-31125576,31125896-31125923
Length = 679
Score = 28.7 bits (61), Expect = 2.5
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +3
Query: 66 QPDHHITPNRTNDLSS-VQGGHVNGQNTQRFPECSEPCINGVCTEGNQCVCNPGYSMDLT 242
+ + + +R ND+ + V V Q+T+R E + ++G GN + +
Sbjct: 123 EKEEKVVVDRKNDIGAEVVDTEVEVQSTERSAEDAAIVVDGAADSGNSEGAAESSAPSVP 182
Query: 243 DRRCKP 260
D RC+P
Sbjct: 183 DERCEP 188
>02_05_1157 -
34533625-34533875,34535279-34536340,34536673-34536837,
34536993-34537941
Length = 808
Score = 28.3 bits (60), Expect = 3.3
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Frame = +3
Query: 171 PCINGVCTE---GNQCVCNPGYSMDLTDRRCKP 260
PC +GVCT G +C C G+S D C+P
Sbjct: 328 PC-HGVCTNLLGGYKCDCPHGFSGDAIKNDCRP 359
>02_05_0958 +
33073302-33073442,33073839-33073913,33074382-33074497,
33076863-33076977,33077100-33077228,33078907-33078954,
33079343-33079469,33079634-33079789,33080031-33080287,
33080431-33080580,33080660-33080714,33080793-33081088,
33081252-33081335,33081869-33081941,33082164-33082291,
33082905-33083090,33083179-33083316,33083394-33083519,
33083705-33083965
Length = 886
Score = 28.3 bits (60), Expect = 3.3
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Frame = -3
Query: 209 TLIAFRANSIDARFRTFRET----LCVLSVNMASLDRGQIVGAVGGYVMIWLVWFM 54
TL F N +D+ + E+ LC L+ M ++ IV A G + +VWFM
Sbjct: 141 TLFYFVNNQVDSTYMFNLESQIPKLCQLAQEMGEKEKISIVHAAGLQALSSMVWFM 196
>06_02_0346 -
14837982-14838122,14838208-14838327,14838411-14838564,
14838793-14838866,14838962-14839095,14839207-14839326,
14843174-14843308,14843842-14843976,14844343-14845003,
14845103-14845264,14845348-14845510,14880834-14881021
Length = 728
Score = 27.9 bits (59), Expect = 4.4
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +3
Query: 24 QPRPDPFYQPHKPNQPDHHITPNRTNDLSSVQGGHVN 134
QP PDP QP +QPD+ P + Q H +
Sbjct: 281 QPPPDPQPQPASHSQPDNQHGPVASQTSEEAQDHHTH 317
>10_01_0318 + 3493913-3496976,3497064-3497392
Length = 1130
Score = 27.5 bits (58), Expect = 5.8
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +3
Query: 270 GGCPNGLCSGPNLCICNMGYHK 335
G P GLC+G L + ++GY++
Sbjct: 481 GAIPPGLCTGGQLAVLDLGYNQ 502
>04_04_1322 + 32640414-32642327
Length = 637
Score = 27.5 bits (58), Expect = 5.8
Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Frame = +3
Query: 174 CINGVCT---EGNQCVCNPGYSMDLTDRRCKPRCAGGCPNGLCSGPNLCICNMGYHKDTS 344
CI CT EGN +C G+ +RC G CP + G + C+ + G K S
Sbjct: 386 CIFEGCTKGAEGNTLLCK-GHG---GGKRCLFEGGGVCPKSVHGGTSFCVAH-GGGKRCS 440
Query: 345 VKGRAVCVKRIR 380
V G C K R
Sbjct: 441 VPG---CTKSAR 449
>02_05_1177 + 34739359-34740304,34740401-34740568,34740672-34741852
Length = 764
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
Frame = +3
Query: 183 GVCTE---GNQCVCNPGYSMDLTDRR-CKPR 263
G CT + CVC PG S + TDR C+P+
Sbjct: 330 GDCTNMLGSHTCVCPPGTSGNWTDRNGCRPK 360
>11_08_0022 +
27733247-27733935,27735722-27735981,27736213-27736404,
27737695-27738686
Length = 710
Score = 27.1 bits (57), Expect = 7.7
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
Frame = +3
Query: 156 PECSEP---CINGVCTEGNQCVCNPGY 227
P C P C+N +G C C+PGY
Sbjct: 277 PACVSPNSYCVNTTNGQGYLCKCSPGY 303
>10_08_0026 -
14253680-14253894,14253981-14254109,14254704-14254769,
14254887-14255133
Length = 218
Score = 27.1 bits (57), Expect = 7.7
Identities = 21/67 (31%), Positives = 28/67 (41%)
Frame = +3
Query: 153 FPECSEPCINGVCTEGNQCVCNPGYSMDLTDRRCKPRCAGGCPNGLCSGPNLCICNMGYH 332
FP ++PC+ C G +CV G S C C+ G N CI N +
Sbjct: 100 FP-LTDPCVAINCGSGGECVKEEGLSY-----HC--ACSPGFVNMFNLTMFPCIKNCAFG 151
Query: 333 KDTSVKG 353
KD S +G
Sbjct: 152 KDCSAQG 158
>04_04_0207 + 23602065-23604315,23604611-23605116
Length = 918
Score = 27.1 bits (57), Expect = 7.7
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +3
Query: 261 RCAGGCPNGLCSGPNLCICNMGYHKDTSVKGRAVCVKRIRRSLNYFLS 404
R AGG P+ LC P + I N+ ++ G + R RR ++ LS
Sbjct: 386 RLAGGLPDTLCDSPAMSIINV---SGNALSGAIPELTRCRRLVSLSLS 430
>03_03_0156 +
14939355-14939435,14939559-14939624,14940331-14940414,
14940796-14940875,14941313-14941358,14941456-14941566,
14942224-14942290,14942615-14942630,14942871-14942931,
14943015-14943145,14943243-14943360,14944053-14944176,
14944517-14944618,14944717-14944785,14946250-14946329
Length = 411
Score = 27.1 bits (57), Expect = 7.7
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +3
Query: 27 PRPDPFYQPHKPNQPDHHITPNRTNDLSSVQGGHVNGQNTQRFP 158
P PDPF HK + +H +R +L+S Q V GQ P
Sbjct: 362 PEPDPFEPRHK--KRNHIPLMSRQTELASKQCSIVKGQKVLSSP 403
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,373,848
Number of Sequences: 37544
Number of extensions: 346902
Number of successful extensions: 1143
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1139
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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