Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_A19
         (513 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   3.8  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           26   3.8  

>SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 340

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 64  INFLGCFAKSAAAVILRQRMLLNFCHEMYKCFFLK 168
           +N  GCF+  + + +      +NF    YKCFF K
Sbjct: 1   MNEHGCFSGGSYSELSNDCETVNFRGIAYKCFFTK 35


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = -3

Query: 271  YRSYNIEKYHNFTI*RADR*TYRIQTGFHLEIKFTLEKNICTFHD-KNSTAFSVLGLRRL 95
            YR  N+ KY N     ++R  +   T F  E+    E  I  F++ KN    + +   R+
Sbjct: 988  YRESNLTKYKNLQNMSSERPGFEPITEFVKELHRCFEDTISFFYNKKNPKVVTGVFNPRI 1047

Query: 94   LISRNSREN 68
            L +R  R N
Sbjct: 1048 LANRPYRTN 1056


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,799,382
Number of Sequences: 5004
Number of extensions: 31043
Number of successful extensions: 55
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)