Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_A19
         (513 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0167 + 1370733-1371316,1371590-1371765,1371865-1372101,137...    28   3.8  

>08_01_0167 +
           1370733-1371316,1371590-1371765,1371865-1372101,
           1372377-1372495,1372530-1372906,1373012-1373117,
           1373520-1373606,1375367-1375421,1375775-1376311,
           1377669-1377739,1377899-1377938,1379560-1379852
          Length = 893

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 444 GVVXSSYLIYIFNTHQYFCALFLSQGYI 361
           GV+ +  + YIF  H Y    +L QG+I
Sbjct: 637 GVITTDQIEYIFTVHPYVDETYLMQGHI 664


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,135,771
Number of Sequences: 37544
Number of extensions: 156123
Number of successful extensions: 262
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)