Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_A19
         (513 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81554-1|CAB04506.1|  838|Caenorhabditis elegans Hypothetical pr...    30   1.1  
AL033514-16|CAA22103.2|  465|Caenorhabditis elegans Hypothetical...    27   6.0  

>Z81554-1|CAB04506.1|  838|Caenorhabditis elegans Hypothetical
           protein F57G4.1 protein.
          Length = 838

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +3

Query: 12  FKKKLQYNI*VRYRSCIN*FSRLFREISSRRNP-KTENAVEFLS*NVQMFFSKVNFIS 182
           +K+KLQY   + Y+S IN  S    EI  +    K +N +EF   ++ +  S  NFIS
Sbjct: 43  YKQKLQYRQELCYKSTINGCS---LEIGGKEEIFKNQNFMEFFFSHLTIILSSTNFIS 97


>AL033514-16|CAA22103.2|  465|Caenorhabditis elegans Hypothetical
           protein Y75B8A.16 protein.
          Length = 465

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/43 (27%), Positives = 26/43 (60%)
 Frame = +2

Query: 185 VKSGLYSIGLPVSPLNGKVVIFFYIIGSIMAT**RGVILSYTK 313
           ++ G++ +G+P+        I F+++G I  T  RG++++ TK
Sbjct: 332 IEIGVHWMGIPLDISFWSQYISFFLVGVIAVTSVRGLLITMTK 374


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,826,567
Number of Sequences: 27780
Number of extensions: 171383
Number of successful extensions: 283
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 282
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)