Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_A18
         (557 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F3.07c |atp20||F0-ATPase subunit G|Schizosaccharomyces pom...    27   2.5  
SPCC1223.09 |||uricase |Schizosaccharomyces pombe|chr 3|||Manual       25   5.7  
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|...    25   5.7  
SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces p...    25   5.7  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   7.5  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    25   10.0 
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    25   10.0 

>SPAC22F3.07c |atp20||F0-ATPase subunit G|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 118

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 386 PLSQKPAYLFPPCSYWVCDSRELVISVQH 300
           PL QK + +  P  YW   S+ELV  V H
Sbjct: 36  PLIQKLSAVQQPIMYWANVSKELVQQVYH 64


>SPCC1223.09 |||uricase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 296

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +2

Query: 266 AELVSYVELVANAAPKLPVLYYHIPSMSRVEINMPAF 376
           A +    + + N  P +  +YY +P+    EIN+  F
Sbjct: 231 ATMYKMADTIINTYPAINEVYYALPNKHYFEINLAPF 267


>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
           Met9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 310 EITSSLLSHTQYEQGGNKYAGFCERGYSS 396
           EIT+S  S   Y + G+ +A +CE+  SS
Sbjct: 374 EITTSWGSPKSYSEIGDLFARYCEKKISS 402


>SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +2

Query: 2   YAKFLADNGIKSVLVGGTTGEHMSLAVSDRKKVITEWVKVSKTT 133
           YAK     G+++ LV  +  E +S  +    +V+ +  ++SKT+
Sbjct: 74  YAKARQKPGVRNHLVSASVAEVVSCGILAPAEVVRQRAQISKTS 117


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 17/59 (28%), Positives = 25/59 (42%)
 Frame = -3

Query: 219 STPTSWQYAARSKTSASGAPPTCT*ICSPVVLDTLTHSVITFFLSDTASDICSPVVPPT 43
           +T T+        T+ + APPT     +  V+   TH   T  +  T     + VVPPT
Sbjct: 91  NTTTTVPPTTSLNTTTTTAPPTTHVNSTTTVVPPTTHVNTTTVVPPTTHVNTTTVVPPT 149


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1402

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 179  VLDLAAYCQDVGVDSLLTLPELY 247
            V+ +  Y QDV  D  L +P+LY
Sbjct: 1116 VIVMGVYDQDVNADLSLRIPQLY 1138


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1347

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +2

Query: 86   DRKKVITEWVKVSKTTGLHIQVQVG 160
            ++KK +++ V +SKT   HI +++G
Sbjct: 1130 EKKKELSKQVPISKTNVGHIDIELG 1154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,360,621
Number of Sequences: 5004
Number of extensions: 48920
Number of successful extensions: 124
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)