Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_A18
         (557 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51819| Best HMM Match : TGF_beta (HMM E-Value=1.9)                  30   1.1  
SB_6576| Best HMM Match : TPR_2 (HMM E-Value=1.2)                      28   5.9  

>SB_51819| Best HMM Match : TGF_beta (HMM E-Value=1.9)
          Length = 696

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
 Frame = +2

Query: 218 DSLLTLPELYFKPATVAELVSYVELVANAAPKLPVLYYHIPSMSRVEIN-MPAFVKEATA 394
           D L+ LPE Y++P  + E V+      N+A +   L+Y  P++  V+++ M A     T 
Sbjct: 1   DCLILLPEAYYRPTVLKEHVTN-PCEVNSADQ-HCLHYRYPNIDGVDVSTMSAESGRLTG 58

Query: 395 RISNFKGLKFTSNDLNEGAQVLRSLKEGQEMFLGADTLLA 514
           R        F S +L+ G Q + S+     +  GA  ++A
Sbjct: 59  RRYQTLSPPFPSVELH-GQQNVLSIDVPSAVVSGAYMVIA 97


>SB_6576| Best HMM Match : TPR_2 (HMM E-Value=1.2)
          Length = 116

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 239 ELYFKPATVAELVSYVELVANAAPKLPVLYY 331
           ELY K  T  E  S ++LVAN   K+   YY
Sbjct: 10  ELYLKMETSGESFSLLQLVANDCYKMGQFYY 40


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,959,926
Number of Sequences: 59808
Number of extensions: 377678
Number of successful extensions: 871
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)