Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_A18
         (557 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g45440.1 68415.m05652 dihydrodipicolinate synthase 2 (DHDPS2)...    30   0.91 
At3g04050.1 68416.m00427 pyruvate kinase, putative similar to py...    30   1.2  
At5g15210.1 68418.m01782 zinc finger homeobox family protein / Z...    29   2.1  
At5g15740.1 68418.m01841 expressed protein contains Pfam PF03138...    29   2.8  
At3g13590.1 68416.m01711 DC1 domain-containing protein contains ...    28   3.7  
At5g52570.1 68418.m06528 beta-carotene hydroxylase, putative sim...    27   6.4  
At2g05990.2 68415.m00652 enoyl-[acyl-carrier protein] reductase ...    27   6.4  
At2g05990.1 68415.m00651 enoyl-[acyl-carrier protein] reductase ...    27   6.4  
At1g13320.1 68414.m01546 serine/threonine protein phosphatase 2A...    27   6.4  
At4g11910.1 68417.m01894 expressed protein hypothetical protein ...    27   8.5  
At3g60880.2 68416.m06811 dihydrodipicolinate synthase 1 (DHDPS1)...    27   8.5  
At3g60880.1 68416.m06810 dihydrodipicolinate synthase 1 (DHDPS1)...    27   8.5  
At3g44330.1 68416.m04763 expressed protein                             27   8.5  
At3g09140.1 68416.m01075 expressed protein contains Pfam profile...    27   8.5  

>At2g45440.1 68415.m05652 dihydrodipicolinate synthase 2 (DHDPS2)
           identical to dihydrodipicolinate synthase 2 (DHDPS2)
           [Arabidopsis thaliana] GI:11066382
          Length = 365

 Score = 30.3 bits (65), Expect = 0.91
 Identities = 29/133 (21%), Positives = 58/133 (43%)
 Frame = +2

Query: 23  NGIKSVLVGGTTGEHMSLAVSDRKKVITEWVKVSKTTGLHIQVQVGGAPLADVLDLAAYC 202
           NG + V+VGGTTGE   ++  +   +I   V     + + +    G     + +      
Sbjct: 97  NGAEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGS-IKVIGNTGSNSTREAIHATEQG 155

Query: 203 QDVGVDSLLTLPELYFKPATVAELVSYVELVANAAPKLPVLYYHIPSMSRVEINMPAFVK 382
             VG+ + L +   Y K  ++  L+++ + V +     P + Y++P  +  +I   A  K
Sbjct: 156 FAVGMHAALHINPYYGK-TSIEGLIAHFQSVLHMG---PTIIYNVPGRTGQDIPPRAIFK 211

Query: 383 EATARISNFKGLK 421
              ++  N  G+K
Sbjct: 212 --LSQNPNLAGVK 222


>At3g04050.1 68416.m00427 pyruvate kinase, putative similar to
           pyruvate kinase, cytosolic isozyme [Nicotiana tabacum]
           SWISS-PROT:Q42954
          Length = 510

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 4/116 (3%)
 Frame = +2

Query: 23  NGIKSVLVGGTT--GEHMSLAVSDRKKVITEWVKVSKTTGLHIQVQ-VGGAPLADVLDLA 193
           +G   V++ G T  G H   AV    ++  E         +H ++Q +   PL+ +  LA
Sbjct: 320 DGTDCVMLSGETAAGAHPETAVLTMSRICKEAEDFIDYDTMHKKIQDIVSLPLSPIESLA 379

Query: 194 AYCQDVGVDSLLTLPELYFKPATVAELVSY-VELVANAAPKLPVLYYHIPSMSRVE 358
           A        ++ T   L      V     Y VELVA   P +P+L   +P ++R +
Sbjct: 380 A-------SAVSTARSLCAAAIVVLTKGGYTVELVAKYRPSVPILSVIVPEITRTD 428


>At5g15210.1 68418.m01782 zinc finger homeobox family protein /
           ZF-HD homeobox family protein various predicted
           proteins, Arabidopsis thaliana
          Length = 271

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = +2

Query: 41  LVGGTTGEHMSLAVSDRKKVITEWVKVSKTTGLHIQVQVGGA-PLADVLDLAAYCQDVGV 217
           L GG  G + ++ +S RK+  T++ +  K        +VG   P AD + +  +C+++GV
Sbjct: 164 LSGGRGGANTAVPMS-RKRFRTKFSQYQKEKMFEFSERVGWRMPKADDVVVKEFCREIGV 222

Query: 218 D 220
           D
Sbjct: 223 D 223


>At5g15740.1 68418.m01841 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown;
          Length = 508

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 19/74 (25%), Positives = 33/74 (44%)
 Frame = +2

Query: 254 PATVAELVSYVELVANAAPKLPVLYYHIPSMSRVEINMPAFVKEATARISNFKGLKFTSN 433
           P + + +  Y   +     K  VL+ +          +P  V++   R+ NF GLKFT  
Sbjct: 197 PISWSNMSYYQNQILPLVKKHKVLHLNRTDTRLANNGLPVEVQKLRCRV-NFNGLKFTPQ 255

Query: 434 DLNEGAQVLRSLKE 475
               G +V++ L+E
Sbjct: 256 IEELGRRVVKILRE 269


>At3g13590.1 68416.m01711 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 513

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
 Frame = -2

Query: 388 SLFHKSRH-IYFHPA--HTGYVIVENW*FRCSISDQFYVGDQFSHC---CRFEIQLRKC 230
           SL  K  H I+ HP   H   +  EN  F CS+ +Q   G  +  C   C F+I + KC
Sbjct: 276 SLPRKMEHGIHIHPLTIHVDAMNNENGFFTCSVCNQHSCGFMYKCCQEDCEFKIDV-KC 333


>At5g52570.1 68418.m06528 beta-carotene hydroxylase, putative
           similar to GI:1575296, beta-carotene hydroxylase
          Length = 303

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 218 DSLLTLPELYFKPATVAELVSYVELVANAAPKLPVLYY 331
           DSL  + E + KP   A  ++ V  + NA P + +LYY
Sbjct: 161 DSLWNMHESHHKPREGAFELNDVFAITNAVPAIGLLYY 198


>At2g05990.2 68415.m00652 enoyl-[acyl-carrier protein] reductase
           [NADH], chloroplast, putative / NADH-dependent enoyl-ACP
           reductase, putative strong similarity to
           enoyl-[acyl-carrier protein] reductase [NADH] SP:P80030
           from [Brassica napus]
          Length = 390

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 456 TWAPSLRSFEVNLRPLKFD 400
           TW P+L  FE +LR  KFD
Sbjct: 127 TWVPALNIFETSLRRGKFD 145


>At2g05990.1 68415.m00651 enoyl-[acyl-carrier protein] reductase
           [NADH], chloroplast, putative / NADH-dependent enoyl-ACP
           reductase, putative strong similarity to
           enoyl-[acyl-carrier protein] reductase [NADH] SP:P80030
           from [Brassica napus]
          Length = 390

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 456 TWAPSLRSFEVNLRPLKFD 400
           TW P+L  FE +LR  KFD
Sbjct: 127 TWVPALNIFETSLRRGKFD 145


>At1g13320.1 68414.m01546 serine/threonine protein phosphatase 2A
           (PP2A) 65 kDa regulatory subunit, putative similar to
           protein phosphatase 2A 65 kDa regulatory subunit
           GI:683502 from [Arabidopsis thaliana]
          Length = 587

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -3

Query: 102 ITFFLSDTASDICSPVVP-PTRTDLIPLSAK 13
           + + +++   ++C  V P PTRTDL+P  A+
Sbjct: 257 VRYMVANQLYELCEAVGPEPTRTDLVPAYAR 287


>At4g11910.1 68417.m01894 expressed protein hypothetical protein
           F7H19.100 -Arabidopsis thaliana,PID:e1310060
          Length = 466

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 89  RKKVITEWVKVSKTTGLHIQVQVGGAPLADVLDLAA 196
           R +V+ EW KV     LH+   + G     +LDL A
Sbjct: 304 RDEVVAEWRKVKSNMSLHVHCHISGDHF--LLDLIA 337


>At3g60880.2 68416.m06811 dihydrodipicolinate synthase 1 (DHDPS1)
           (DHDPS) (DHPS1) identical to SP|Q9LZX6
           Dihydrodipicolinate synthase 1, chloroplast precursor
           (EC 4.2.1.52) (DHDPS 1) {Arabidopsis thaliana}
          Length = 365

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +2

Query: 20  DNGIKSVLVGGTTGE 64
           +NG + V+VGGTTGE
Sbjct: 96  ENGAEGVIVGGTTGE 110


>At3g60880.1 68416.m06810 dihydrodipicolinate synthase 1 (DHDPS1)
           (DHDPS) (DHPS1) identical to SP|Q9LZX6
           Dihydrodipicolinate synthase 1, chloroplast precursor
           (EC 4.2.1.52) (DHDPS 1) {Arabidopsis thaliana}
          Length = 364

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +2

Query: 20  DNGIKSVLVGGTTGE 64
           +NG + V+VGGTTGE
Sbjct: 95  ENGAEGVIVGGTTGE 109


>At3g44330.1 68416.m04763 expressed protein
          Length = 565

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 507 SVSAPRNISWPSLRERKTWAPSLRS 433
           SVS PR I+ P++   + W P LR+
Sbjct: 192 SVSEPRKIASPTITNIQGWLPGLRA 216


>At3g09140.1 68416.m01075 expressed protein contains Pfam profile
           PF05056: Protein of unknown function (DUF674);
           expression supported by MPSS
          Length = 473

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +2

Query: 98  VITEWVKVSKTTGLHIQVQVGGAPLADVLDLAAYCQDVGVDSLLTLPELYF 250
           +IT+ +KV  ++  ++   + G   AD   L+     VGV  +LTL E +F
Sbjct: 186 IITDDLKVEASSMDNVLNTLRGLGYADTSKLSEILLHVGVSEVLTLLECFF 236


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,473,940
Number of Sequences: 28952
Number of extensions: 260365
Number of successful extensions: 770
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)