Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_A17
(616 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g54030.1 68418.m06720 DC1 domain-containing protein contains ... 33 0.15
At4g01575.1 68417.m00205 serine protease inhibitor, Kazal-type f... 32 0.35
At2g17620.1 68415.m02038 cyclin, putative (CYC2a) similar to cyc... 31 0.61
At5g60920.1 68418.m07642 phytochelatin synthetase, putative / CO... 31 0.80
At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein... 30 1.4
At3g17750.1 68416.m02265 protein kinase family protein contains ... 30 1.4
At3g62810.1 68416.m07057 complex 1 family protein / LVR family p... 29 2.4
At5g55960.1 68418.m06979 expressed protein 29 3.2
At3g61980.1 68416.m06961 serine protease inhibitor, Kazal-type f... 29 3.2
At3g32904.1 68416.m04164 hypothetical protein 29 3.2
At1g73460.1 68414.m08504 protein kinase family protein contains ... 29 3.2
At1g73450.1 68414.m08503 protein kinase, putative similar to nuc... 29 3.2
At5g56050.1 68418.m06993 hypothetical protein 28 5.7
At1g61870.1 68414.m06981 pentatricopeptide (PPR) repeat-containi... 28 5.7
At5g42620.1 68418.m05188 expressed protein 27 9.9
>At5g54030.1 68418.m06720 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 419
Score = 33.1 bits (72), Expect = 0.15
Identities = 18/68 (26%), Positives = 30/68 (44%)
Frame = +1
Query: 130 KIYSPVCGSDGKTYENPCEFYCEKDKTHSNMTIVKNTACEVGIPCYCTLEYAPVCGSNGK 309
K+Y+ + S G+ YEN C F C+ + + T C + + C P+ S K
Sbjct: 83 KVYTHIFTSSGRIYENTCHF-CQ---SKLEFLFARCTICNLNVDIECLFALPPLTISEPK 138
Query: 310 TYANKCSL 333
+ + SL
Sbjct: 139 HHKHSLSL 146
>At4g01575.1 68417.m00205 serine protease inhibitor, Kazal-type
family protein contains Pfam domain PF00050: Kazal-type
serine protease inhibitor domain
Length = 144
Score = 31.9 bits (69), Expect = 0.35
Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Frame = +1
Query: 352 IPSLKMEHD---GE-CQGAKLASLHPCICTREKDPVCGSDGVTYSNLCLLKCASLSKPSL 519
+PS K+ + GE C+G + P C R DPVCG D VTY C CA +
Sbjct: 47 LPSEKINGEKNRGEFCEGIAKPASCPVQCFRP-DPVCGEDSVTY--WC--GCADALCHGV 101
Query: 520 SIEHTGPCD 546
+ G CD
Sbjct: 102 RVVKQGACD 110
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +1
Query: 142 PVCGSDGKTYENPCEFYCEKDKTHSNMTIVKNTACEVG 255
PVCG D TY C D + +VK AC+VG
Sbjct: 80 PVCGEDSVTYWCGC-----ADALCHGVRVVKQGACDVG 112
>At2g17620.1 68415.m02038 cyclin, putative (CYC2a) similar to cyclin
2b protein [Arabidopsis thaliana] GI:509423; contains
Pfam profiles PF00134: Cyclin, N-terminal domain,
PF02984: Cyclin, C-terminal domain; identical to cDNA
cyc2a mRNA for cyclin 2a protein GI:728518
Length = 429
Score = 31.1 bits (67), Expect = 0.61
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +1
Query: 88 YSVTALPPPLCICGKIYSPVCGSDG-KTYENPCEFYC 195
Y + PP L +Y+ C DG + + + CEF+C
Sbjct: 336 YEMLRFPPSLLAATSVYTAQCTLDGSRKWNSTCEFHC 372
>At5g60920.1 68418.m07642 phytochelatin synthetase, putative / COBRA
cell expansion protein COB, putative similar to
phytochelatin synthetase GI:29570314; similar to
GB:AAK56072; identified in Roudier, et al, Plant Phys.
(2002) 130:538-548 (PMID:12376623); identical to cDNA
putative phytochelatin synthetase GI:3559804; contains
Pfam profile PF04833: Phytochelatin synthetase-like
conserved region
Length = 456
Score = 30.7 bits (66), Expect = 0.80
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +2
Query: 236 TPH-ARWASPATVPWN-MPPSVALTEKLTPTNVHWNAPKRLYRL*RWNMMANARELNWRV 409
TPH A SP T +PP V T + P VHW+ K+ Y+ W + N+R+
Sbjct: 270 TPHLASVVSPPTKKGTVLPPLVQCTRHMCPIRVHWHV-KQNYKE-YWRVKITITNFNYRL 327
>At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein
contains PF01422: NF-X1 type zinc finger
Length = 912
Score = 29.9 bits (64), Expect = 1.4
Identities = 27/119 (22%), Positives = 45/119 (37%), Gaps = 10/119 (8%)
Frame = +1
Query: 115 LCICGKIYSPVCGSDGKTYENPCEFYCEKDKT----HSNMTIVKNTACE-----VGIPCY 267
LC CGK P + + C CE+ + H + + C V C+
Sbjct: 165 LCYCGKEEDPPADNPW-ILPHSCGEVCERPLSNNCGHCCLLLCHPGPCASCPKLVKAKCF 223
Query: 268 CT-LEYAPVCGSNGKTYANKCSLECTQKIIPSLKMEHDGECQGAKLASLHPCICTREKD 441
C +E CG + + C I ++ HDGEC + +++ C C + K+
Sbjct: 224 CGGVEDVRRCGHKQFSCGDVCERVLDCNIHNCREICHDGECPPCRERAVYKCSCGKVKE 282
>At3g17750.1 68416.m02265 protein kinase family protein contains
Pfam profile: PF00069 Eukaryotic protein kinase domain
Length = 1138
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -1
Query: 163 YHLTRRRDYRFFRKYITAVAELLPSIL 83
YHL R DY +FR+++ V ELL + L
Sbjct: 887 YHLLRLYDYFYFREHLLIVCELLKANL 913
>At3g62810.1 68416.m07057 complex 1 family protein / LVR family
protein contains Pfam PF05347: Complex 1 protein (LYR
family)
Length = 106
Score = 29.1 bits (62), Expect = 2.4
Identities = 21/66 (31%), Positives = 30/66 (45%)
Frame = +2
Query: 416 RVYARARKIQFAGATASLTAICAS*NARHCPNQA*ASNTPVLAIITECRPWETKTIRTSI 595
R RA K FAG T L A + + N+ ASN+ + ++ E R T+ I T I
Sbjct: 11 RALLRATKKSFAGDTEMLKASASEIRKKFEENRLVASNSDITRLLEEARE-ATQFISTMI 69
Query: 596 LSQMRN 613
+ N
Sbjct: 70 VQAKLN 75
>At5g55960.1 68418.m06979 expressed protein
Length = 648
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -1
Query: 337 IPVNICWRKFFR-*SHRRGHIPRYSSRGCPPR 245
IP N+ W++ FR S R+ P SS PPR
Sbjct: 14 IPTNLAWQEMFRSASSRKPQDPPSSSSSSPPR 45
>At3g61980.1 68416.m06961 serine protease inhibitor, Kazal-type
family protein contains Pfam domain PF00050: Kazal-type
serine protease inhibitor domain
Length = 117
Score = 28.7 bits (61), Expect = 3.2
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +1
Query: 439 DPVCGSDGVTY 471
DPVCG+DGVTY
Sbjct: 52 DPVCGTDGVTY 62
Score = 28.3 bits (60), Expect = 4.3
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +1
Query: 142 PVCGSDGKTYENPCEFYCEKDKTHSNMTIVKNTACEVG 255
PVCG+DG TY C D +VK AC+ G
Sbjct: 53 PVCGTDGVTYWCGC-----PDAACHGARVVKKGACDTG 85
>At3g32904.1 68416.m04164 hypothetical protein
Length = 330
Score = 28.7 bits (61), Expect = 3.2
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +2
Query: 248 RWASPATVP-WNMPPSVALTEKLTPTNVHWNAPKRLYRL*RWNMMANARELN 400
+W +P T P WN P +V + PT W P + +W+ A +L+
Sbjct: 276 QWGTPPTAPQWNSPSNVPQWT-IPPTTPQWGTPSSMP---QWSSSPTAPQLS 323
>At1g73460.1 68414.m08504 protein kinase family protein contains
protein kinase domain Pfam:PF00069
Length = 1169
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -1
Query: 163 YHLTRRRDYRFFRKYITAVAELLPSIL 83
YHL R DY ++R+++ V ELL + L
Sbjct: 918 YHLLRLYDYFYYREHLLIVCELLKANL 944
>At1g73450.1 68414.m08503 protein kinase, putative similar to
nuclear serine/threonine protein kinase GI:3582644 from
[Rattus norvegicus]
Length = 1152
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -1
Query: 163 YHLTRRRDYRFFRKYITAVAELLPSIL 83
YHL R DY ++R+++ V ELL + L
Sbjct: 901 YHLLRLYDYFYYREHLLIVCELLKANL 927
>At5g56050.1 68418.m06993 hypothetical protein
Length = 283
Score = 27.9 bits (59), Expect = 5.7
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = +2
Query: 233 KTPHARWASPATVPWNMPP-SVALTEKLTP 319
+TP ++W SP PW P S T TP
Sbjct: 21 ETPSSKWYSPIYTPWRTTPRSTQSTPTTTP 50
>At1g61870.1 68414.m06981 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 408
Score = 27.9 bits (59), Expect = 5.7
Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
Frame = +1
Query: 166 TYENPCEFYCEKDKTHSNMTIVK---NTACEVGIPCYCTLEYAPVCGSNGKTYANKCSLE 336
TY + +C +D + K N C+ CY TL Y G + +T + C
Sbjct: 294 TYSHLIHGFCNEDDFEEAKKLFKIMVNRGCKPDSECYFTLIYYLCKGGDFETALSLCKES 353
Query: 337 CTQKIIPSLKM 369
+ +PS +
Sbjct: 354 MEKNWVPSFSI 364
>At5g42620.1 68418.m05188 expressed protein
Length = 841
Score = 27.1 bits (57), Expect = 9.9
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +1
Query: 289 VCGSNGKTYANKC--SLECTQKIIPSLKMEHDGECQGA 396
VC S ++Y C SL+C+ + + S E D EC G+
Sbjct: 786 VCHSACQSYNMACGASLDCSDQTLFSTAEEGDAECTGS 823
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,716,503
Number of Sequences: 28952
Number of extensions: 338777
Number of successful extensions: 867
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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