Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_A15
(460 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_22072| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.46
SB_44788| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_1780| Best HMM Match : Retinin_C (HMM E-Value=7.1) 29 1.8
SB_56617| Best HMM Match : RVT_1 (HMM E-Value=0.04) 29 2.4
SB_9756| Best HMM Match : Cadherin (HMM E-Value=0) 29 2.4
SB_39497| Best HMM Match : zf-C3HC4 (HMM E-Value=5.1e-12) 28 4.3
SB_26795| Best HMM Match : Exo_endo_phos (HMM E-Value=6.3e-10) 28 4.3
SB_15881| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.6
SB_10682| Best HMM Match : Pkinase (HMM E-Value=2.5e-07) 27 5.6
SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024) 27 7.5
SB_37009| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_14565| Best HMM Match : YGGT (HMM E-Value=0.11) 27 9.9
SB_31134| Best HMM Match : Kinesin (HMM E-Value=0) 27 9.9
SB_28995| Best HMM Match : LicD (HMM E-Value=0.018) 27 9.9
SB_6204| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_5515| Best HMM Match : PspA_IM30 (HMM E-Value=0.14) 27 9.9
>SB_22072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 642
Score = 31.1 bits (67), Expect = 0.46
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 73 TRVSLTPLCNNTAVSITSNDSPPFNNAD 156
T+ S TP+C + A T+N SP N++D
Sbjct: 570 TQSSATPMCQSGATDTTNNQSPAVNSSD 597
>SB_44788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 979
Score = 29.1 bits (62), Expect = 1.8
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +2
Query: 230 KRNAEVTSSAPS*INYSSKDNQTSSNTLTVSGTDP 334
+ N +VT P ++YSS D+ N GT+P
Sbjct: 820 RHNDDVTDKKPRLVDYSSADSSDHDNAADNKGTEP 854
>SB_1780| Best HMM Match : Retinin_C (HMM E-Value=7.1)
Length = 317
Score = 29.1 bits (62), Expect = 1.8
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +1
Query: 25 DDDKMILITVVLSA-LVTRVSLTPLCNNTAVSITSNDSP 138
DDD L ++ A L S TPLC + + +I DSP
Sbjct: 61 DDDPASLANIINEAFLAPMASFTPLCADASPTIPPTDSP 99
>SB_56617| Best HMM Match : RVT_1 (HMM E-Value=0.04)
Length = 447
Score = 28.7 bits (61), Expect = 2.4
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 25 DDDKMILITVVLSALVTRV-SLTPLCNNTAVSITSNDSP 138
DDD L ++ A ++ + S TPLC + + +I DSP
Sbjct: 111 DDDPASLANIINEAFLSPMASFTPLCADASPTIPPTDSP 149
>SB_9756| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 608
Score = 28.7 bits (61), Expect = 2.4
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Frame = +1
Query: 67 LVTRVSLTPLCNNTAVSITSNDSPPFNNADPVMQL-YNSVIVSDYKAAVKTTFQLEKECR 243
+ T +P + V IT ND N+ PV + Y V+VS+Y +T +L
Sbjct: 356 IATDNGTSPRSAHARVHITVND---VNDNRPVFEPPYYQVMVSEYAPVGQTILRLTVSDN 412
Query: 244 SDVISSVVNKLLLEGQPN 297
+S +N ++ G PN
Sbjct: 413 DTAENSQLNLRVVSGDPN 430
>SB_39497| Best HMM Match : zf-C3HC4 (HMM E-Value=5.1e-12)
Length = 558
Score = 27.9 bits (59), Expect = 4.3
Identities = 11/41 (26%), Positives = 25/41 (60%)
Frame = +1
Query: 4 IPSRRRIDDDKMILITVVLSALVTRVSLTPLCNNTAVSITS 126
+P RR +M+++ + +++R++L+P C+N S+ S
Sbjct: 375 LPPLRRDYTHQMVVVAPLKVKMISRLTLSPTCSNKPHSLPS 415
>SB_26795| Best HMM Match : Exo_endo_phos (HMM E-Value=6.3e-10)
Length = 609
Score = 27.9 bits (59), Expect = 4.3
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +1
Query: 226 LEKECRSDVISSVVNKLLLE-GQPNVVEYAYSLWYRSGEDIVKVYFPIE 369
L RSD+ + L++E +PN + + WYR + VK++ E
Sbjct: 245 LSHTLRSDLADPYLEMLIIEIKKPNTKPFLIATWYRPPKSSVKLFESFE 293
>SB_15881| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 796
Score = 27.5 bits (58), Expect = 5.6
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 3/92 (3%)
Frame = +1
Query: 25 DDDKMILITVVLSALVTRVSL-TPLCNNTAVSITSNDSPPFNNADPVMQL--YNSVIVSD 195
DDD L ++ A + ++ TPLC + + +I DSP + +L N+ +
Sbjct: 290 DDDPASLANIINEAFLAPMAFFTPLCADASPTIPPTDSPSVTELGVLKKLSSLNTTKATR 349
Query: 196 YKAAVKTTFQLEKECRSDVISSVVNKLLLEGQ 291
+ + + ++S++N EG+
Sbjct: 350 PDGVPGWLLKENADLLAPAVTSIINTSFAEGR 381
>SB_10682| Best HMM Match : Pkinase (HMM E-Value=2.5e-07)
Length = 165
Score = 27.5 bits (58), Expect = 5.6
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = +1
Query: 232 KECRSDVISSVVNKLLLEGQPNVVEYAYSLWYRSGEDIVKVYFPIEFRLLFNEDP 396
K C + SV N G P++ +Y + WYR+ E ++ F +F +P
Sbjct: 96 KICDFGLARSVSNITQEAGDPSLTDYVATRWYRAPEILLASPRKATFSWIFYIEP 150
>SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)
Length = 1213
Score = 27.1 bits (57), Expect = 7.5
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +1
Query: 19 RIDDDKMILITVVLSALVTRVSLTPLCNNTAVSITSNDSPPFNNAD 156
+ID+ ++IL+T A S +C ++A + T+N +P N +
Sbjct: 815 KIDNMEVILLTPTSMAASMATSSKKVCPSSAPTTTTNPTPSVTNGN 860
>SB_37009| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 535
Score = 26.6 bits (56), Expect = 9.9
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 100 NNTAVSITSNDSPPFNNADPVMQ 168
N+ AV T +PP NN DP+ +
Sbjct: 388 NDLAVLYTQKKNPPMNNRDPLSE 410
>SB_14565| Best HMM Match : YGGT (HMM E-Value=0.11)
Length = 357
Score = 26.6 bits (56), Expect = 9.9
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 156 VSIIKWRRVIGGNRDCSVVT*RCERNAG 73
+S++KW G DC+VV R E N G
Sbjct: 1 MSLMKWMLDYGDKSDCNVVVVRKEDNDG 28
>SB_31134| Best HMM Match : Kinesin (HMM E-Value=0)
Length = 727
Score = 26.6 bits (56), Expect = 9.9
Identities = 16/56 (28%), Positives = 23/56 (41%)
Frame = +1
Query: 70 VTRVSLTPLCNNTAVSITSNDSPPFNNADPVMQLYNSVIVSDYKAAVKTTFQLEKE 237
V V L LC ++ S D F+ A + I+ D+K +K L KE
Sbjct: 608 VNNVDLALLCTHSGSRDNSQDLYTFHEAVSQLNDIEDKIIDDHKCTIKEAKTLLKE 663
>SB_28995| Best HMM Match : LicD (HMM E-Value=0.018)
Length = 1164
Score = 26.6 bits (56), Expect = 9.9
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 229 EKECRSDVISSVVNKLLLEGQ 291
EK CR ++ +N LLL+GQ
Sbjct: 155 EKLCRGGIVLEYINNLLLKGQ 175
>SB_6204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 281
Score = 26.6 bits (56), Expect = 9.9
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 19 RIDDDKMILITVVLSALVTRVSLTPLCNNTAVS 117
RI+DD + I L+A T + LCNN S
Sbjct: 179 RIEDDGAVAIAEALAAYNTNLIKLVLCNNNIAS 211
>SB_5515| Best HMM Match : PspA_IM30 (HMM E-Value=0.14)
Length = 388
Score = 26.6 bits (56), Expect = 9.9
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -3
Query: 311 AYSTTFGCPSRSSLFTTELMTSLL 240
A S FGCPSRS++ T + S L
Sbjct: 5 ARSARFGCPSRSNMLTLKFDKSSL 28
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,756,588
Number of Sequences: 59808
Number of extensions: 205784
Number of successful extensions: 505
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 932979724
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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