Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_A14
         (638 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    22   3.8  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    22   3.8  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    21   6.6  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   8.7  

>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +2

Query: 455 TRTSALGVDRTYNSASHNESFSFHCKLQILFFSYQYCVVSLCL 583
           T +S + +  T + ++ NES S      I   S  +C++ +CL
Sbjct: 39  TPSSTIDLYNTSSVSNFNESSSSVFPNYIRTTSMVFCIIIMCL 81


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +2

Query: 455 TRTSALGVDRTYNSASHNESFSFHCKLQILFFSYQYCVVSLCL 583
           T +S + +  T + ++ NES S      I   S  +C++ +CL
Sbjct: 39  TPSSTIDLYNTSSVSNFNESSSSVFPNYIRTTSMVFCIIIMCL 81


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = -2

Query: 364 TKIYNYILHSKIKITNRFVCCVLAG 290
           TK YN ++H +     R   C + G
Sbjct: 90  TKSYNLLIHERTHTDERPYSCDICG 114


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/28 (25%), Positives = 14/28 (50%)
 Frame = -1

Query: 509 RCDSRYYTSCLHPERRFWCILPRLRCSL 426
           +C       CL    R  C++P ++C++
Sbjct: 239 KCQECRLKKCLSVGMRPECVVPEVQCAV 266


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,670
Number of Sequences: 336
Number of extensions: 2687
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16501678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)