Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_A14
         (638 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    25   0.82 
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    23   1.9  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    23   1.9  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.8  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.6 bits (51), Expect = 0.82
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 248 IRSAIRCGSRRSRAPTPAPSACERGLSTSPPSVRAP 141
           I + I  G    R+P  +PS  E+  ST+  + R+P
Sbjct: 727 IHNYIMRGEASPRSPNASPSPAEQCASTTTITARSP 762


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
 Frame = +1

Query: 7   GLSREN-QTRTQTTKESSRSVQMSTSQTRTYL*TRGQSEDFKRGECGARTDG 159
           G+ RE  Q   Q TKE  +S   STS   + +      E  KR EC     G
Sbjct: 174 GMKREAVQEERQRTKERDQSEVESTSSLHSDMPIERILEAEKRVECKMEQQG 225


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
 Frame = +1

Query: 7   GLSREN-QTRTQTTKESSRSVQMSTSQTRTYL*TRGQSEDFKRGECGARTDG 159
           G+ RE  Q   Q TKE  +S   STS   + +      E  KR EC     G
Sbjct: 174 GMKREAVQEERQRTKERDQSEVESTSSLHSDMPIERILEAEKRVECKMEQQG 225


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = -3

Query: 231 MWQPPFACSNTCSFSL*TWSFNFTT 157
           +WQPP    ++CS  +  + ++  T
Sbjct: 142 VWQPPAVYKSSCSIDVEFFPYDVQT 166


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,167
Number of Sequences: 438
Number of extensions: 3291
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)