Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_A13
         (637 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    23   2.1  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   2.8  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           22   3.7  

>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 199 GHYGFHVHEKGDISG 243
           G YG H H+ G ++G
Sbjct: 9   GFYGSHHHQSGSVAG 23


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 95  LSPIWSGRTSEAILR 139
           L P+W G  SEA+ R
Sbjct: 220 LPPVWQGGESEALAR 234


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 15/43 (34%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
 Frame = -3

Query: 518 PQA---TRPPALPVFLESGWSVRPKSSARSCRTTALPRIPCAP 399
           PQA    RP         GW V P  S  +      P IP AP
Sbjct: 48  PQAILQVRPSTSAAADVDGWQVTPLPSDGTTSPEPDPEIPVAP 90


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,446
Number of Sequences: 336
Number of extensions: 3101
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16397237
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)