Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_A13
(637 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces... 126 2e-30
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 29 0.43
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo... 29 0.74
SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 27 1.7
SPCC18B5.11c |cds1||replication checkpoint kinase Cds1|Schizosac... 26 4.0
SPCC1020.03 |||mitochondrial iron ion transporter|Schizosaccharo... 26 4.0
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac... 26 5.2
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 26 5.2
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom... 25 6.9
SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces pom... 25 6.9
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc... 25 9.1
>SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 154
Score = 126 bits (305), Expect = 2e-30
Identities = 67/150 (44%), Positives = 91/150 (60%), Gaps = 3/150 (2%)
Frame = +1
Query: 91 RAIAHLVGEN-IRGNITFTRLP-DGKVHVEGSIVGLPPG-HYGFHVHEKGDISGGCGSTG 261
RA+A L G++ + G +TF ++ + +V V +VG GFH+H+ GD + GC S G
Sbjct: 3 RAVAVLRGDSKVSGVVTFEQVDQNSQVSVIVDLVGNDANAKRGFHIHQFGDNTNGCTSAG 62
Query: 262 SHFNPENKEHGHPSDENRHVGDLGNAEFDKNYSSKIDMIDPHLAITGAHGILGRAVVLHE 441
HFNPE K HG + RHVGDLGN E D + K D +++ GA+ I+GR +V+H
Sbjct: 63 PHFNPEGKTHGDRTAAVRHVGDLGNLESDAQGNIKTTFSDSVISLFGANSIIGRTIVIHA 122
Query: 442 RADDFGRTDHPDSRKTGNAGGRVACGVIGI 531
DD G+ +S KTGNAG R ACGVIGI
Sbjct: 123 GEDDLGKGTSEESLKTGNAGARNACGVIGI 152
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 29.5 bits (63), Expect = 0.43
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = -3
Query: 524 MTPQATRPPALPVFLESGWSVRPKSSARSCRTTALPRIPCAPVM 393
+TP +PPA PV E+ +P ++ + + P+ P APV+
Sbjct: 510 ITPSVPQPPAAPVVPEAPSVHQPPAAPVAPEVPSAPQRPAAPVV 553
Score = 27.9 bits (59), Expect = 1.3
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = -3
Query: 530 IPMTPQATRPPALPVFLESGWSVRPKSSARSCRTTALPRIPCAPVMARCG 381
+P P + PA+PV E+ +P ++ ++P+ P PV+ G
Sbjct: 643 VPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQPPAVPVVPEAG 692
Score = 26.2 bits (55), Expect = 4.0
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = -3
Query: 530 IPMTPQATRPPALPVFLESGWSVRPKSSARSCRTTALPRIPCAPVM 393
+P P + PA+PV E+ +P + + ++P+ P APV+
Sbjct: 553 VPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVPQPPVAPVV 598
Score = 25.8 bits (54), Expect = 5.2
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = -3
Query: 527 PMTPQATRPPALPVFLESGWSVRPKSSARSCRTTALPRIPCAPVM 393
P P +PP PV E+ +P + + ++P+ P PV+
Sbjct: 584 PEVPSVPQPPVAPVVPEAPSVPQPPVAPVAPEVPSVPQRPAVPVV 628
>SPAPB8E5.07c |||ribosome biogenesis protein
Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1163
Score = 28.7 bits (61), Expect = 0.74
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +2
Query: 476 IREKPATLVDASPAVSSEYCKTSLYLFIFFVL 571
+ EK L D S CKTS+Y+ +FF L
Sbjct: 119 VLEKLLLLQDYSSWTHGNSCKTSIYILLFFAL 150
>SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 27.5 bits (58), Expect = 1.7
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +1
Query: 277 ENKE-HGHPSDENRHVGDLGNAEFDKNYSSKIDMIDPHLAI 396
ENK HG D+ D + E K Y+SKI+ ID + I
Sbjct: 85 ENKSVHGMTIDDIMDEEDRADQELSKVYTSKINTIDTSIPI 125
>SPCC18B5.11c |cds1||replication checkpoint kinase
Cds1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 26.2 bits (55), Expect = 4.0
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +1
Query: 115 ENIRGNITFTRLPDGKVHVEGSIVGLPPGHYGFHVHEKGDISGGCGSTGSHFNPE-NKEH 291
EN+ + TR+ DGK V + G + F H+ ++ G S+F+ E + H
Sbjct: 30 ENVFMKLVMTRMLDGKTEVIPLTTDVHNGFWRFGRHKSCEVVLN-GPRVSNFHFEIYQGH 88
Query: 292 GHPSDENRHV 321
+ SDE+ +V
Sbjct: 89 RNDSDESENV 98
>SPCC1020.03 |||mitochondrial iron ion
transporter|Schizosaccharomyces pombe|chr 3|||Manual
Length = 397
Score = 26.2 bits (55), Expect = 4.0
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +1
Query: 265 HFNPENKEHGHPSDENRH 318
H N + EH HPS E+ H
Sbjct: 380 HLNGSSGEHSHPSHEHTH 397
>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 5.2
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -3
Query: 197 GGSPTIDP-STWTLPSGSRVNVILPLMFSPT 108
GGS P S + +PS S VN+ PL+ SP+
Sbjct: 395 GGSMPKGPNSIYKIPSASMVNLSSPLVTSPS 425
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.8 bits (54), Expect = 5.2
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +1
Query: 316 HVGDLGNAEFDKNYSSKIDMIDPHL 390
HV + GN FD + S + ++D L
Sbjct: 102 HVNEDGNVAFDSEFDSNLKLLDSEL 126
>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 561
Score = 25.4 bits (53), Expect = 6.9
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +1
Query: 256 TGSHFNPENKEHGHPSDENRHVGDLGN 336
T + +PE+ G PSD N LGN
Sbjct: 462 THKNISPESSRFGTPSDPNSSSQSLGN 488
>SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 347
Score = 25.4 bits (53), Expect = 6.9
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 395 LPEHTGFSAGLWFYTSGLMISAALTTQIREKPAT 496
LP+ F+ G F +GL L Q++ KP T
Sbjct: 134 LPDGVSFNEGAGFGIAGLTAWEVLVRQMKVKPGT 167
>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
Sap155|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1188
Score = 25.0 bits (52), Expect = 9.1
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -3
Query: 524 MTPQATRPPALPVFLESGWSVRPKSSARS 438
+TP+ R LP F WS R S RS
Sbjct: 685 VTPEYLRTDVLPEFFHCFWSRRMASDRRS 713
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,388,747
Number of Sequences: 5004
Number of extensions: 49399
Number of successful extensions: 134
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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