Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_A13
(637 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1599 - 28022196-28022218,28022355-28022408,28022545-280226... 168 3e-42
03_02_1006 + 13150394-13150450,13150787-13150899,13152538-131527... 159 2e-39
08_02_1596 + 28125331-28125556,28125986-28126047,28126160-281261... 145 2e-35
03_02_0185 - 6239421-6239480,6239971-6240024,6240523-6240578,624... 125 3e-29
04_04_0863 + 28847761-28848009,28848108-28848131,28849388-288494... 50 1e-06
03_06_0167 - 32115770-32115886,32116388-32117102,32117178-321173... 32 0.33
12_02_0445 - 19153580-19154269 30 1.8
12_01_0676 + 5765154-5765241,5765329-5765453,5765533-5765604,576... 29 3.1
09_06_0081 + 20745627-20748144,20748211-20748308 29 3.1
03_02_0335 - 7579319-7579580,7580384-7581074,7581183-7581240 29 3.1
10_08_1058 + 22608852-22609172,22609257-22610651 29 4.1
08_02_1227 - 25398063-25398302,25398629-25398790,25399019-253991... 29 4.1
10_02_0121 - 5513491-5513630,5514765-5514850,5515206-5515333 28 5.4
07_01_0384 + 2861819-2862169 28 5.4
06_02_0298 + 13921310-13921834,13921923-13922063,13923601-139239... 28 5.4
04_04_0588 - 26412487-26413887 28 5.4
05_01_0141 - 937428-937717,938483-938705 28 7.1
01_01_1234 - 10007446-10007940,10008030-10008125,10008980-100092... 28 7.1
11_01_0763 + 6402901-6403971,6404581-6404826 27 9.4
10_06_0119 - 10956190-10956754,10956984-10957139,10958402-10958622 27 9.4
07_01_0297 - 2156960-2157736 27 9.4
>07_03_1599 -
28022196-28022218,28022355-28022408,28022545-28022620,
28022727-28022758,28022921-28023016,28023105-28023206,
28023291-28023366
Length = 152
Score = 168 bits (409), Expect = 3e-42
Identities = 77/148 (52%), Positives = 99/148 (66%), Gaps = 1/148 (0%)
Frame = +1
Query: 91 RAIAHLVG-ENIRGNITFTRLPDGKVHVEGSIVGLPPGHYGFHVHEKGDISGGCGSTGSH 267
+A+A L E ++G I F++ DG V GS+ GL PG +GFHVH GD + GC STG H
Sbjct: 3 KAVAVLASSEGVKGTIFFSQEGDGPTSVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGPH 62
Query: 268 FNPENKEHGHPSDENRHVGDLGNAEFDKNYSSKIDMIDPHLAITGAHGILGRAVVLHERA 447
FNP KEHG P DENRH GDLGN + + +++ D + +TGAH I+GRAVV+H
Sbjct: 63 FNPTGKEHGAPQDENRHAGDLGNITAGADGVANVNVSDSQIPLTGAHSIIGRAVVVHADP 122
Query: 448 DDFGRTDHPDSRKTGNAGGRVACGVIGI 531
DD G+ H S+ TGNAGGRVACG+IG+
Sbjct: 123 DDLGKGGHELSKTTGNAGGRVACGIIGL 150
>03_02_1006 +
13150394-13150450,13150787-13150899,13152538-13152709,
13153791-13153878,13153971-13154072,13154197-13154292,
13154547-13154578,13154727-13154802,13155264-13155317,
13155431-13155453
Length = 270
Score = 159 bits (386), Expect = 2e-39
Identities = 70/139 (50%), Positives = 92/139 (66%)
Frame = +1
Query: 115 ENIRGNITFTRLPDGKVHVEGSIVGLPPGHYGFHVHEKGDISGGCGSTGSHFNPENKEHG 294
E ++G I F + DG V GS+ GL PG +GFH+H GD + GC STG H+NP KEHG
Sbjct: 130 EIVKGTIHFVQEGDGPTTVTGSVSGLKPGLHGFHIHALGDTTNGCMSTGPHYNPAGKEHG 189
Query: 295 HPSDENRHVGDLGNAEFDKNYSSKIDMIDPHLAITGAHGILGRAVVLHERADDFGRTDHP 474
P DE RH GDLGN ++ + I ++D + +TG + I+GRAVV+H DD G+ H
Sbjct: 190 APEDETRHAGDLGNVTAGEDGVANIHVVDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHE 249
Query: 475 DSRKTGNAGGRVACGVIGI 531
S+ TGNAGGRVACG+IG+
Sbjct: 250 LSKTTGNAGGRVACGIIGL 268
>08_02_1596 +
28125331-28125556,28125986-28126047,28126160-28126199,
28126934-28127029,28127138-28127169,28127274-28127349,
28127430-28127483,28127916-28127941
Length = 203
Score = 145 bits (352), Expect = 2e-35
Identities = 67/148 (45%), Positives = 93/148 (62%), Gaps = 1/148 (0%)
Frame = +1
Query: 91 RAIAHLVGEN-IRGNITFTRLPDGKVHVEGSIVGLPPGHYGFHVHEKGDISGGCGSTGSH 267
+A+A L G + + G +T T+ G V + GL PG +GFH+HE GD + GC STG H
Sbjct: 53 KAVAVLKGTSQVEGVVTLTQDDQGPTTVNVRVTGLTPGLHGFHLHEFGDTTNGCISTGPH 112
Query: 268 FNPENKEHGHPSDENRHVGDLGNAEFDKNYSSKIDMIDPHLAITGAHGILGRAVVLHERA 447
FNP N HG P DE RH GDLGN + ++ ++D + ++G + ++GRA V+HE
Sbjct: 113 FNPNNLTHGAPEDEVRHAGDLGNIVANAEGVAEATIVDKQIPLSGPNSVVGRAFVVHELE 172
Query: 448 DDFGRTDHPDSRKTGNAGGRVACGVIGI 531
DD G+ H S TGNAGGR+ACGV+G+
Sbjct: 173 DDLGKGGHELSLSTGNAGGRLACGVVGL 200
>03_02_0185 -
6239421-6239480,6239971-6240024,6240523-6240578,
6241108-6241183,6241276-6241307,6241421-6241516,
6242498-6242599,6242728-6242833
Length = 193
Score = 125 bits (302), Expect = 3e-29
Identities = 57/115 (49%), Positives = 75/115 (65%), Gaps = 1/115 (0%)
Frame = +1
Query: 121 IRGNITFTRLPD-GKVHVEGSIVGLPPGHYGFHVHEKGDISGGCGSTGSHFNPENKEHGH 297
+ G + F + P G V G + GL PG +GFH+H GD + GC STG HFNP NK HG
Sbjct: 23 VAGALHFFQDPSTGYTEVRGRVTGLAPGLHGFHIHSFGDTTNGCNSTGPHFNPHNKSHGA 82
Query: 298 PSDENRHVGDLGNAEFDKNYSSKIDMIDPHLAITGAHGILGRAVVLHERADDFGR 462
PSD+ RHVGDLGN +K+ + I + D ++++G H ILGRAVV+H +DD GR
Sbjct: 83 PSDDERHVGDLGNIVANKDGVADIFIKDLQISLSGPHSILGRAVVVHADSDDLGR 137
>04_04_0863 +
28847761-28848009,28848108-28848131,28849388-28849460,
28849550-28849684,28850191-28850411,28851747-28851983
Length = 312
Score = 50.4 bits (115), Expect = 1e-06
Identities = 32/119 (26%), Positives = 56/119 (47%)
Frame = +1
Query: 94 AIAHLVGENIRGNITFTRLPDGKVHVEGSIVGLPPGHYGFHVHEKGDISGGCGSTGSHFN 273
A+A G I G + ++ VE + GL PG +G+ ++E GD++ G STG +N
Sbjct: 167 AVAEFKGPVIFGVVRLAQVNMELAIVEATFSGLSPGKHGWSINEFGDLTRGAESTGKVYN 226
Query: 274 PENKEHGHPSDENRHVGDLGNAEFDKNYSSKIDMIDPHLAITGAHGILGRAVVLHERAD 450
P + N+ +GDLG E + ++ L + ++GR++ L+ D
Sbjct: 227 PSDYR------SNKPLGDLGTLEAGEKGEAQFSASKEKLKVV---DLIGRSIALYATED 276
>03_06_0167 -
32115770-32115886,32116388-32117102,32117178-32117383,
32118094-32118138,32119047-32119109,32119726-32119749,
32120673-32120772,32120814-32120907,32121036-32121074,
32121605-32121668
Length = 488
Score = 32.3 bits (70), Expect = 0.33
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 148 LPDGKVHVEGSIVGLPPGHYGFHVHEKGDISGGCGSTG 261
L + V+ ++ GL P +GFHVH G + GC G
Sbjct: 32 LASSLITVKENVSGLKPVLHGFHVHALGGTTNGCMRNG 69
>12_02_0445 - 19153580-19154269
Length = 229
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Frame = +1
Query: 382 PHLAITGAHGILGR---AVVLHERADDFGRTDHPDSRKTGNAGG-RVACGVIGI 531
P++A G +GILG AV +H RAD GNAGG CG + +
Sbjct: 145 PNVAGGGRNGILGEEIEAVGVHLRADSVHSDASTTDLMAGNAGGVSCQCGCLSV 198
>12_01_0676 +
5765154-5765241,5765329-5765453,5765533-5765604,
5765728-5765802,5765880-5765905,5766709-5766870,
5766963-5767037,5767133-5767204,5767289-5767363,
5767461-5767529,5767839-5767910,5768030-5768161,
5768430-5768920,5769315-5769476,5769570-5769709,
5769818-5770037,5770398-5770633,5771560-5772051
Length = 927
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +2
Query: 338 RNLTRTTPARLI*STRISPLPEHTGFSAGLWFYTSGLMISAALTTQIREKPA 493
+NLT+ L S PLP+ TG S+ + Y L IS + + P+
Sbjct: 249 KNLTKLAEFHLANSNLTGPLPDLTGMSSLSFVYLENLRISGEVPQSLFSLPS 300
>09_06_0081 + 20745627-20748144,20748211-20748308
Length = 871
Score = 29.1 bits (62), Expect = 3.1
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Frame = -3
Query: 548 REMFYSIPMTPQATRPPALPVFLESGWSVRPK------SSARSCRTTALPRIPCAPV 396
R + S+P P+A+ PA PV GW+V P S + + ++A PR AP+
Sbjct: 582 RALRVSVPH-PRASSAPAPPVAAPRGWTVSPTTARYSFSDSGASSSSAAPRASTAPL 637
>03_02_0335 - 7579319-7579580,7580384-7581074,7581183-7581240
Length = 336
Score = 29.1 bits (62), Expect = 3.1
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Frame = -3
Query: 203 WPG-----GSPTIDPSTWTLPSGSRVNVILPLMFSPTRWAIARVGC 81
WPG GS +DP+ + LP G+ V P +S W AR GC
Sbjct: 37 WPGILSNAGSARMDPTGFELPPGAARAVPAPTGWSGRLW--ARTGC 80
>10_08_1058 + 22608852-22609172,22609257-22610651
Length = 571
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +2
Query: 419 AGLWFYTSGLMIS--AALTTQIREKPATLVDASPAVSSEYCKTSLYLFI 559
A L FY +GL++ +A +R P T V SPA +++ L L++
Sbjct: 100 ASLLFYLAGLVLLTVSAAVPSLRPAPCTGVPCSPATGTQFSVFFLALYL 148
>08_02_1227 -
25398063-25398302,25398629-25398790,25399019-25399150,
25399909-25399961,25400465-25400942
Length = 354
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = -3
Query: 527 PMTPQATRPPALPVFLESGWSVRPKSSARSCRTTALPRI 411
P +P +PPA FL SGW K R +T PRI
Sbjct: 120 PFSPTQPKPPAS--FLSSGWPDGVKKRGRPKGSTNKPRI 156
>10_02_0121 - 5513491-5513630,5514765-5514850,5515206-5515333
Length = 117
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1
Query: 229 GDISGGCGSTGSHFNPENKEHGHPSDEN 312
G I+G G TG H P+ + HP E+
Sbjct: 64 GPITGNSGGTGQHAAPKYRSTTHPDKED 91
>07_01_0384 + 2861819-2862169
Length = 116
Score = 28.3 bits (60), Expect = 5.4
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +3
Query: 492 QRWWTRRLRCHRNTV 536
QRWW RR RC N V
Sbjct: 42 QRWWQRRWRCGSNVV 56
>06_02_0298 +
13921310-13921834,13921923-13922063,13923601-13923951,
13924071-13924130,13924261-13924380,13924569-13924718
Length = 448
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/54 (31%), Positives = 22/54 (40%)
Frame = -3
Query: 332 PRSPTWRFSSLGWPCSLFSGLK*EPVEPQPPDMSPFSWTWNP*WPGGSPTIDPS 171
P S W ++G+P P P PP +P P G PT+DPS
Sbjct: 259 PESNAWTVPTIGFP----------PPPPPPPSPAPIQHFARPLHVWGHPTMDPS 302
>04_04_0588 - 26412487-26413887
Length = 466
Score = 28.3 bits (60), Expect = 5.4
Identities = 19/67 (28%), Positives = 30/67 (44%)
Frame = -3
Query: 344 NSALPRSPTWRFSSLGWPCSLFSGLK*EPVEPQPPDMSPFSWTWNP*WPGGSPTIDPSTW 165
+S+ P SP S+ P + S P P + PF++ + GGSP + P +W
Sbjct: 69 SSSAPPSPR-SSSASDAPVRVISSSPSSPSPPSARHIFPFAYEASTTTVGGSPRLHPLSW 127
Query: 164 TLPSGSR 144
S S+
Sbjct: 128 QQSSMSQ 134
>05_01_0141 - 937428-937717,938483-938705
Length = 170
Score = 27.9 bits (59), Expect = 7.1
Identities = 20/70 (28%), Positives = 23/70 (32%), Gaps = 1/70 (1%)
Frame = +1
Query: 205 YGFHVHEKGDISGGCGSTGSHFNPENKEHGHPSD-ENRHVGDLGNAEFDKNYSSKIDMID 381
YG H G GG G G H HGH H G G F ++ +
Sbjct: 96 YGAHKLSHGHGHGGYGYGGHHGGLFGGHHGHHGGLFGGHHGHHGGGLFGGHHGHHGGLFG 155
Query: 382 PHLAITGAHG 411
H G HG
Sbjct: 156 GHHGFGGHHG 165
>01_01_1234 -
10007446-10007940,10008030-10008125,10008980-10009253,
10009381-10009682,10010078-10010123,10010319-10010368,
10011124-10011268,10012051-10012229,10012327-10012485,
10012636-10012887,10012972-10013097,10013197-10013525,
10014183-10014252
Length = 840
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +2
Query: 32 FYSPQLLSL*AAIMNARSRHGLSPIWS 112
F++P +++ AA+ AR GLSP+WS
Sbjct: 332 FFAPSVIAA-AAVYAARCTLGLSPLWS 357
>11_01_0763 + 6402901-6403971,6404581-6404826
Length = 438
Score = 27.5 bits (58), Expect = 9.4
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +3
Query: 471 PRFEKNRQRWWTRRLRC 521
P + + R RWW RR RC
Sbjct: 263 PAWRERRGRWWRRRPRC 279
>10_06_0119 - 10956190-10956754,10956984-10957139,10958402-10958622
Length = 313
Score = 27.5 bits (58), Expect = 9.4
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +3
Query: 471 PRFEKNRQRWWTRRLRC 521
P + + R RWW RR RC
Sbjct: 252 PAWRERRGRWWRRRPRC 268
>07_01_0297 - 2156960-2157736
Length = 258
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +1
Query: 118 NIRGNITFTRLPDGKVH 168
N+ G IT+ LPDG+VH
Sbjct: 80 NLDGRITYQSLPDGEVH 96
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,159,160
Number of Sequences: 37544
Number of extensions: 406124
Number of successful extensions: 1315
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1314
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -