Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_A13
(637 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.) 151 5e-37
SB_55396| Best HMM Match : Sod_Cu (HMM E-Value=1.5e-07) 60 2e-09
SB_580| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 2e-06
SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23) 38 0.007
SB_57208| Best HMM Match : Ion_trans (HMM E-Value=5.5e-34) 30 1.8
SB_2459| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0) 29 2.4
SB_47280| Best HMM Match : DUF655 (HMM E-Value=2.2) 29 4.2
SB_40049| Best HMM Match : LRR_1 (HMM E-Value=0.082) 28 5.5
SB_24692| Best HMM Match : Disintegrin (HMM E-Value=7.6e-23) 28 5.5
SB_11521| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_46813| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_53814| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_28074| Best HMM Match : Helicase_C (HMM E-Value=4.2) 27 9.7
>SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 154
Score = 151 bits (366), Expect = 5e-37
Identities = 69/129 (53%), Positives = 88/129 (68%), Gaps = 1/129 (0%)
Frame = +1
Query: 148 LPDGK-VHVEGSIVGLPPGHYGFHVHEKGDISGGCGSTGSHFNPENKEHGHPSDENRHVG 324
+ +GK + G+I GL G++GFH+H GD + GC S G HFNP KEHG PSDENRHVG
Sbjct: 22 MAEGKPCKITGTIEGLKAGNHGFHIHVYGDNTNGCVSAGPHFNPFKKEHGGPSDENRHVG 81
Query: 325 DLGNAEFDKNYSSKIDMIDPHLAITGAHGILGRAVVLHERADDFGRTDHPDSRKTGNAGG 504
DLGN + + IDM D + + G H ++GR+VV+H DD GR H DS+ TG+AGG
Sbjct: 82 DLGNVVAGDDGKACIDMTDALVTLVGEHSVVGRSVVVHADEDDLGRGGHEDSKTTGHAGG 141
Query: 505 RVACGVIGI 531
R+ACGVIGI
Sbjct: 142 RLACGVIGI 150
>SB_55396| Best HMM Match : Sod_Cu (HMM E-Value=1.5e-07)
Length = 100
Score = 59.7 bits (138), Expect = 2e-09
Identities = 30/70 (42%), Positives = 41/70 (58%)
Frame = +1
Query: 316 HVGDLGNAEFDKNYSSKIDMIDPHLAITGAHGILGRAVVLHERADDFGRTDHPDSRKTGN 495
HVGDLGN ++N + D + + I+GRA+V+H DD GR H S+ TGN
Sbjct: 1 HVGDLGNIIANQNGRATFRFEDKTVKVWD---IIGRAIVVHADEDDLGRGGHELSKSTGN 57
Query: 496 AGGRVACGVI 525
+G RV CG+I
Sbjct: 58 SGARVGCGII 67
>SB_580| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 79
Score = 50.0 bits (114), Expect = 2e-06
Identities = 21/48 (43%), Positives = 33/48 (68%)
Frame = +1
Query: 289 HGHPSDENRHVGDLGNAEFDKNYSSKIDMIDPHLAITGAHGILGRAVV 432
HG P D++RH+GDLGN E D N + + + D +++TG I+GR++V
Sbjct: 2 HGAPEDKDRHLGDLGNIEADANGIADVSITDCLVSLTGQCSIIGRSLV 49
>SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23)
Length = 1531
Score = 37.9 bits (84), Expect = 0.007
Identities = 35/118 (29%), Positives = 59/118 (50%), Gaps = 13/118 (11%)
Frame = +1
Query: 121 IRGNITFTRL-PDGKVHVEGSIVGLPPGHYGFHVHE-----KGDISGGCGST--GSHFNP 276
IRG +TFT+ P+ +++ ++ G+ + +H+ KG+ + C + G+ ++P
Sbjct: 66 IRGTVTFTQSSPNTSTNIKLALTGVNET-LSWQIHDLPVIYKGNAATTCNTVALGNLYDP 124
Query: 277 ENKEHGHPSDENRH---VGDL-GNAEF-DKNYSSKIDMIDPHLAITGAHGILGRAVVL 435
+ S + VGDL G F D N S + D +L +TG HGI GR +VL
Sbjct: 125 DGTATAQCSAAQKKSCAVGDLRGKFGFIDGNNMSSV-FHDSNLPLTGRHGIFGRTLVL 181
>SB_57208| Best HMM Match : Ion_trans (HMM E-Value=5.5e-34)
Length = 722
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +2
Query: 398 PEHTGFSAGLWFYTSGLMISAALTTQIREKPATLVDASPAVSSEY 532
PE + F LW+Y SGLMI+ ++ + E D S ++Y
Sbjct: 165 PEKSFFGL-LWYYVSGLMIALSIACTVAETIPPPCDESVICGAQY 208
>SB_2459| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1741
Score = 29.9 bits (64), Expect = 1.8
Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Frame = +1
Query: 127 GNITFTRLPDGKVHVEGSIVGLPPGHYGFHVHEKGDI-----SGGCGSTGSHFNPENK 285
G ITFTRLP +V V L + FHV E +I + G + GSH N +NK
Sbjct: 560 GLITFTRLPPSQVQVFEGTHNLSL-TWSFHVVEGENIFTLSFNRGENTIGSHSNDDNK 616
>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
Length = 1467
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = -3
Query: 251 PQPPDMSPFSWTWNP*WPGGSPTIDPSTWTLPSGSRVNVILPLMFSPT 108
P P MSP S +++P PG SP+ PS+ P+ + P +SPT
Sbjct: 421 PSSPSMSPASPSYSPTSPGYSPS-SPSSGYSPASPSYSPTSP-SYSPT 466
>SB_47280| Best HMM Match : DUF655 (HMM E-Value=2.2)
Length = 508
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/44 (31%), Positives = 18/44 (40%)
Frame = +1
Query: 187 GLPPGHYGFHVHEKGDISGGCGSTGSHFNPENKEHGHPSDENRH 318
G P YG H G S G G + + + +GHPS H
Sbjct: 317 GHPSTRYGPHSTRYGHPSTGYGHPSTRYGHPSTRYGHPSTRYGH 360
>SB_40049| Best HMM Match : LRR_1 (HMM E-Value=0.082)
Length = 380
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +1
Query: 268 FNPENKEHGHPSDENRHVGDLGNAEFDKNYSSKIDMIDPHL 390
F PE E DEN GD+ N + D Y ++ DP L
Sbjct: 333 FYPEFDEEDDDDDENEFEGDMANGD-DHFYEDFLEAEDPAL 372
>SB_24692| Best HMM Match : Disintegrin (HMM E-Value=7.6e-23)
Length = 1592
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 527 PMTPQATRPPALPVFLESGWSVRPKSS 447
P TP A RP P+ G+ +RP+S+
Sbjct: 1489 PATPTAVRPRGSPIRARGGFCLRPESA 1515
>SB_11521| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 953
Score = 28.3 bits (60), Expect = 5.5
Identities = 21/85 (24%), Positives = 30/85 (35%)
Frame = +1
Query: 67 HHERSQPTRAIAHLVGENIRGNITFTRLPDGKVHVEGSIVGLPPGHYGFHVHEKGDISGG 246
HH T + ++ GN T + HV+G+ PG+ HV G +
Sbjct: 829 HHVPGYTTHHVPGNTAHHVPGNTTHHVPGNTTYHVQGNTAHHVPGNKTHHV--PGYTTHH 886
Query: 247 CGSTGSHFNPENKEHGHPSDENRHV 321
+H P N H P HV
Sbjct: 887 VPGNTTHHVPGNTTHHVPGYTTHHV 911
>SB_46813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 328
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = +1
Query: 169 VEGSIVGLPPGHYGFHVHEKGDISGGCGSTGSHFNPEN 282
VEG V G H+ DI GCG + HF N
Sbjct: 173 VEGESVWWKKVEDGVEFHDVTDIPSGCGPSLHHFRSSN 210
>SB_53814| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1301
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +1
Query: 193 PPGHYGFHVHEKGDISGGCGSTGSHFNPENKEHGHPSDENRHVGDLGNAEFDKNY 357
P H H I G +G+ NKE H D+++ V LGN D+++
Sbjct: 344 PSNHNDKHASGSEGILFDTGKSGT----TNKEEPHEIDDHKKVESLGNLSSDEDF 394
>SB_28074| Best HMM Match : Helicase_C (HMM E-Value=4.2)
Length = 366
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 325 DLGNAEFDKNYSSKIDMIDPHLAI 396
DLG KN+++K+D I PHL I
Sbjct: 96 DLGIILLVKNFNAKLDNIGPHLKI 119
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,622,059
Number of Sequences: 59808
Number of extensions: 401112
Number of successful extensions: 1381
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1380
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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