Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_A13
(637 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g18100.1 68418.m02125 superoxide dismutase [Cu-Zn] / copper/z... 159 1e-39
At1g08830.1 68414.m00983 superoxide dismutase [Cu-Zn] (SODCC) / ... 154 4e-38
At2g28190.1 68415.m03423 superoxide dismutase [Cu-Zn], chloropla... 150 9e-37
At1g12520.1 68414.m01449 superoxide dismutase copper chaperone, ... 62 4e-10
At1g10970.1 68414.m01259 metal transporter, putative (ZIP4) simi... 31 0.48
At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1) id... 30 1.1
At4g38660.1 68417.m05473 thaumatin, putative similar to thaumati... 30 1.5
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 29 2.0
At3g11870.1 68416.m01455 protein kinase-related contains eukaryo... 29 2.0
At1g53300.1 68414.m06041 thioredoxin family protein contains Pfa... 29 2.6
At5g61350.1 68418.m07698 protein kinase family protein contains ... 28 6.0
At1g15780.1 68414.m01893 expressed protein 28 6.0
At4g24800.1 68417.m03552 MA3 domain-containing protein similar t... 27 7.9
At2g46800.2 68415.m05840 zinc transporter (ZAT) identical to zin... 27 7.9
At2g46800.1 68415.m05839 zinc transporter (ZAT) identical to zin... 27 7.9
>At5g18100.1 68418.m02125 superoxide dismutase [Cu-Zn] / copper/zinc
superoxide dismutase (CSD3) identical to copper/zinc
superoxide dismutase GI:3273755
Length = 164
Score = 159 bits (386), Expect = 1e-39
Identities = 73/148 (49%), Positives = 97/148 (65%), Gaps = 1/148 (0%)
Frame = +1
Query: 91 RAIAHLVGEN-IRGNITFTRLPDGKVHVEGSIVGLPPGHYGFHVHEKGDISGGCGSTGSH 267
RA+A + G+N +RG + F + G HV G I GL PG +GFH+H GD + GC STG H
Sbjct: 9 RAVALIAGDNNVRGCLQFVQDISGTTHVTGKISGLSPGFHGFHIHSFGDTTNGCISTGPH 68
Query: 268 FNPENKEHGHPSDENRHVGDLGNAEFDKNYSSKIDMIDPHLAITGAHGILGRAVVLHERA 447
FNP N+ HG P++E RH GDLGN N ++I + D H+ ++G + ILGRAVV+H
Sbjct: 69 FNPLNRVHGPPNEEERHAGDLGNILAGSNGVAEILIKDKHIPLSGQYSILGRAVVVHADP 128
Query: 448 DDFGRTDHPDSRKTGNAGGRVACGVIGI 531
DD G+ H S+ TGNAG RV CG+IG+
Sbjct: 129 DDLGKGGHKLSKSTGNAGSRVGCGIIGL 156
>At1g08830.1 68414.m00983 superoxide dismutase [Cu-Zn] (SODCC) /
copper/zinc superoxide dismutase (CSD1) identical to
SWISS-PROT: P24704
Length = 152
Score = 154 bits (374), Expect = 4e-38
Identities = 70/139 (50%), Positives = 89/139 (64%)
Frame = +1
Query: 115 ENIRGNITFTRLPDGKVHVEGSIVGLPPGHYGFHVHEKGDISGGCGSTGSHFNPENKEHG 294
E + G I FT+ DG V G++ GL PG +GFHVH GD + GC STG HFNP+ K HG
Sbjct: 12 EGVTGTIFFTQEGDGVTTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPDGKTHG 71
Query: 295 HPSDENRHVGDLGNAEFDKNYSSKIDMIDPHLAITGAHGILGRAVVLHERADDFGRTDHP 474
P D NRH GDLGN + ++ + D + +TG + I+GRAVV+H DD G+ H
Sbjct: 72 APEDANRHAGDLGNITVGDDGTATFTITDCQIPLTGPNSIVGRAVVVHADPDDLGKGGHE 131
Query: 475 DSRKTGNAGGRVACGVIGI 531
S TGNAGGRVACG+IG+
Sbjct: 132 LSLATGNAGGRVACGIIGL 150
>At2g28190.1 68415.m03423 superoxide dismutase [Cu-Zn], chloroplast
(SODCP) / copper/zinc superoxide dismutase (CSD2)
identical to GP:3273753:AF061519
Length = 216
Score = 150 bits (363), Expect = 9e-37
Identities = 71/152 (46%), Positives = 95/152 (62%), Gaps = 1/152 (0%)
Frame = +1
Query: 79 SQPTRAIAHLVG-ENIRGNITFTRLPDGKVHVEGSIVGLPPGHYGFHVHEKGDISGGCGS 255
S +A+A L G ++ G +T T+ G V I GL PG +GFH+HE GD + GC S
Sbjct: 62 SAAKKAVAVLKGTSDVEGVVTLTQDDSGPTTVNVRITGLTPGPHGFHLHEFGDTTNGCIS 121
Query: 256 TGSHFNPENKEHGHPSDENRHVGDLGNAEFDKNYSSKIDMIDPHLAITGAHGILGRAVVL 435
TG HFNP N HG P DE RH GDLGN + + ++ ++D + +TG + ++GRA V+
Sbjct: 122 TGPHFNPNNMTHGAPEDECRHAGDLGNINANADGVAETTIVDNQIPLTGPNSVVGRAFVV 181
Query: 436 HERADDFGRTDHPDSRKTGNAGGRVACGVIGI 531
HE DD G+ H S TGNAGGR+ACGVIG+
Sbjct: 182 HELKDDLGKGGHELSLTTGNAGGRLACGVIGL 213
>At1g12520.1 68414.m01449 superoxide dismutase copper chaperone,
putative similar to copper chaperone for superoxide
dismutase [Homo sapiens] gi|2431868|gb|AAC51764
Length = 254
Score = 61.7 bits (143), Expect = 4e-10
Identities = 37/120 (30%), Positives = 61/120 (50%)
Frame = +1
Query: 94 AIAHLVGENIRGNITFTRLPDGKVHVEGSIVGLPPGHYGFHVHEKGDISGGCGSTGSHFN 273
A+A G +I G + F ++ +E + GL PG + + ++E GD++ G STGS +N
Sbjct: 98 AVAEFKGPDIFGVVRFAQVSMELARIEANFTGLSPGTHSWCINEYGDLTNGAASTGSLYN 157
Query: 274 PENKEHGHPSDENRHVGDLGNAEFDKNYSSKIDMIDPHLAITGAHGILGRAVVLHERADD 453
P + G +GDLG E DKN + L + ++GRAVV+++ D+
Sbjct: 158 PFQDQTG-----TEPLGDLGTLEADKNGEAFYSGKKEKLKVA---DLIGRAVVVYKTDDN 209
>At1g10970.1 68414.m01259 metal transporter, putative (ZIP4) similar
to Zn and Cd transporter ZNT1 [Thlaspi caerulescens]
gi|7381054|gb|AAF61374; member of the Zinc (Zn2+)-Iron
(Fe2+) permease (ZIP) family, PMID:11500563
Length = 408
Score = 31.5 bits (68), Expect = 0.48
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Frame = +1
Query: 94 AIAHLVGENIRGNITFTRLPDGKVHVEGSIVGLPPGHYGFHVHEKGDISGGCGSTGSHFN 273
A+ +VGE + N F G +H IVG+ H H H + G C +H +
Sbjct: 182 AVVPVVGERVTDNKVFGEEDGGGIH----IVGI-RAHAAHHRHSHSNSHGTCDG-HAHGH 235
Query: 274 PENKEHGHPSDEN--RHV 321
HG+ EN RHV
Sbjct: 236 SHGHMHGNSDVENGARHV 253
>At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1)
identical to peroxisome biogenesis protein PEX1
[Arabidopsis thaliana] gi|12006272|gb|AAG44817; contains
Pfam profile PF00004: ATPase, AAA family; identical to
cDNA peroxisome biogenesis protein PEX1 (PEX1) mRNA,
partial cds GI:12006271
Length = 1130
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = -3
Query: 548 REMFYSIPMTPQATRPPALPVFLESG---WSVRPKSSARSCRTTALPRI 411
R++ +++ T + PP LPV L SG WSV S+ S + R+
Sbjct: 34 RQLLHALQSTSSSPLPPLLPVELRSGDRRWSVAWSGSSSSSSAIEIARV 82
>At4g38660.1 68417.m05473 thaumatin, putative similar to
thaumatin-like protein [Arabidopsis thaliana]
GI:2435406, thaumatin-like protein precursor [Pyrus
pyrifolia] GI:3241854; contains Pfam profile PF00314:
Thaumatin family
Length = 345
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Frame = -3
Query: 203 WPG-----GSPTIDPSTWTLPSGSRVNVILPLMFSPTRWAIARVGCE 78
WPG GSPT+ + + LP G+ ++ P +S W AR GC+
Sbjct: 43 WPGILSNAGSPTLSTTGFELPKGTSRSLQAPTGWSGRFW--ARTGCK 87
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 29.5 bits (63), Expect = 2.0
Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Frame = +1
Query: 178 SIVGLPPGHYGFHVHEKGDISGGCGSTGSHFNP-ENKEHGHPSDENRHVG-DLGNAEFDK 351
S G GHY H HE+ GC + N +K + H D+ R D +D
Sbjct: 124 SEAGSRNGHYRDHEHERSSRYDGCDDYSCNDNNYRSKNYHHSRDDGREKDYDYTRRSYDS 183
Query: 352 NY 357
Y
Sbjct: 184 EY 185
>At3g11870.1 68416.m01455 protein kinase-related contains eukaryotic
protein kinase domain, INTERPRO:IPR000719
Length = 554
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 217 VHEKGDISGGCGSTGSHFNPENKEHGHPSDEN 312
V +K D SGG G N E+K PSD+N
Sbjct: 58 VEKKSDPSGGLGEENEKTNSESKVLSVPSDQN 89
>At1g53300.1 68414.m06041 thioredoxin family protein contains Pfam
profiles PF00085: Thioredoxin, PF00515: TPR Domain;
similar to tetratricopeptide repeat protein 2
(GI:7248701) [Drosophila melanogaster]; similar to DnaJ
homolog subfamily C member 7 (Tetratricopeptide repeat
protein 2) (TPR repeat protein 2) (Swiss-Prot:Q99615)
[Homo sapiens]
Length = 699
Score = 29.1 bits (62), Expect = 2.6
Identities = 25/102 (24%), Positives = 38/102 (37%)
Frame = -3
Query: 548 REMFYSIPMTPQATRPPALPVFLESGWSVRPKSSARSCRTTALPRIPCAPVMARCGXXXX 369
RE+ P++P ++P L + + SS+ S + RI APV+ R
Sbjct: 33 RELDLGSPVSPLRSQPRGLTT---TTTTTTTSSSSSSSSGSVTGRIKHAPVIGRSNSVRS 89
Query: 368 XXXXXXXSNSALPRSPTWRFSSLGWPCSLFSGLK*EPVEPQP 243
+N+ PRS + SS L S P P
Sbjct: 90 QSNSSSGNNNLRPRSDSATTSSSSHSQPLLSSSSSSATSPAP 131
>At5g61350.1 68418.m07698 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 842
Score = 27.9 bits (59), Expect = 6.0
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 7/46 (15%)
Frame = -3
Query: 242 PDMSPFSWTW---NP*--WPGGSP--TIDPSTWTLPSGSRVNVILP 126
P + P S TW P +P GS T+DPST T P G +I P
Sbjct: 228 PKIDPLSRTWLSDKPYNTFPEGSRNVTVDPSTITYPDGGATALIAP 273
>At1g15780.1 68414.m01893 expressed protein
Length = 1335
Score = 27.9 bits (59), Expect = 6.0
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Frame = -3
Query: 215 WNP*WPGGSPTIDPSTW--TLPSGSRVNVILPLM 120
W P P G P +D W LP SR ++ +M
Sbjct: 6 WRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIM 39
>At4g24800.1 68417.m03552 MA3 domain-containing protein similar to
programmed cell death 4 protein [Gallus gallus]
GI:12958564; contains Pfam profile PF02847: MA3 domain
Length = 702
Score = 27.5 bits (58), Expect = 7.9
Identities = 16/57 (28%), Positives = 23/57 (40%)
Frame = +1
Query: 157 GKVHVEGSIVGLPPGHYGFHVHEKGDISGGCGSTGSHFNPENKEHGHPSDENRHVGD 327
GK + V H G + K D GG G+ G + + H P+D N G+
Sbjct: 44 GKASGASNAVKHRRSHAGRSIRSKKDGGGGKGNWGKLIDTDGDYHIDPNDPNYDSGE 100
>At2g46800.2 68415.m05840 zinc transporter (ZAT) identical to zinc
transporter ZAT [Arabidopsis thaliana]
gi|4206640|gb|AAD11757; member of the cation diffusion
facilitator (CDF) family, or cation efflux (CE) family,
PMID:11500563
Length = 398
Score = 27.5 bits (58), Expect = 7.9
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Frame = +1
Query: 199 GHYGFHVHEKGDISGGCGSTGSHFNPENKE---HGHPSDENRHVGDLGNAEFDKN 354
GH H H+ + S G T H + +++ HGH D++ GD+ DK+
Sbjct: 189 GHGHGHGHDHHNHSHGVTVTTHHHHHDHEHGHSHGHGEDKHHAHGDVTEQLLDKS 243
>At2g46800.1 68415.m05839 zinc transporter (ZAT) identical to zinc
transporter ZAT [Arabidopsis thaliana]
gi|4206640|gb|AAD11757; member of the cation diffusion
facilitator (CDF) family, or cation efflux (CE) family,
PMID:11500563
Length = 398
Score = 27.5 bits (58), Expect = 7.9
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Frame = +1
Query: 199 GHYGFHVHEKGDISGGCGSTGSHFNPENKE---HGHPSDENRHVGDLGNAEFDKN 354
GH H H+ + S G T H + +++ HGH D++ GD+ DK+
Sbjct: 189 GHGHGHGHDHHNHSHGVTVTTHHHHHDHEHGHSHGHGEDKHHAHGDVTEQLLDKS 243
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,005,224
Number of Sequences: 28952
Number of extensions: 289261
Number of successful extensions: 826
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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